Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-DMBP28068 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-DMBP28068 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-DMBP28068 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-DMBP28068 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-DMBP28068 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-DMBP28068 RNA5SP53-201ENST00000391299 120 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 CYCSP17-201ENST00000407870 315 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 AL713922.1-201ENST00000416477 747 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 AC016745.1-201ENST00000422178 508 ntTSL 5 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 AC007365.2-201ENST00000428806 458 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 ST13P21-201ENST00000453250 1098 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 LINC01795-201ENST00000454367 813 ntTSL 3 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 AC013727.1-202ENST00000455716 580 ntTSL 4 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 AL133480.2-201ENST00000456723 487 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 RN7SL518P-201ENST00000491887 280 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 RPL23AP80-201ENST00000495605 424 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 AC122714.1-201ENST00000502510 459 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 AP002833.2-201ENST00000531585 462 ntTSL 3 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 SSU72P6-201ENST00000532644 488 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 PHBP2-201ENST00000532859 806 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 AC068205.2-201ENST00000532864 771 ntTSL 5 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 LDHC-204ENST00000536880 957 ntTSL 5 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 MIR378H-201ENST00000579966 83 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 AC019131.1-201ENST00000583654 622 ntTSL 5 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 AC067852.5-201ENST00000589299 310 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 ZNF569-205ENST00000589833 762 ntTSL 3 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 OR7A11P-201ENST00000597719 953 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 AL359704.2-201ENST00000604335 521 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 AC022001.1-201ENST00000605193 268 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 GBA3-207ENST00000613293 1233 ntTSL 5 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 AMYH02020865.1-207ENST00000617096 458 ntTSL 3 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 Metazoa_SRP.96-201ENST00000621315 318 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 AC008626.2-201ENST00000624425 248 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 AC006453.3-201ENST00000635891 377 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-DMBP28068 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-DMBP28068 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-DMBP28068 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 NPIPB15-201ENST00000429990 1428 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 AC102941.1-201ENST00000567616 1537 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 BLNK-203ENST00000413476 1599 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-DMBP28068 AC007485.2-201ENST00000623493 1667 ntBASIC5.12□□□□□ -1.59
HLA-DMBP28068 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 AC013488.1-201ENST00000526618 1838 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-DMBP28068 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-DMBP28068 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-DMBP28068 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 OR52D1-201ENST00000322641 1065 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 RNA5SP114-201ENST00000363780 113 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-DMBP28068 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 RN7SKP188-201ENST00000410789 317 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 RNU4-64P-201ENST00000410795 131 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 CCR8-202ENST00000414803 1078 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-DMBP28068 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 KCND3-AS1-202ENST00000427471 583 ntTSL 3 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 AL513303.1-201ENST00000432452 591 ntTSL 2 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 BX005266.3-201ENST00000443013 1075 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 CRYGGP-201ENST00000443337 145 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 DPP10-AS1-202ENST00000448663 644 ntTSL 3 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-DMBP28068 AC006026.3-201ENST00000454029 143 ntTSL 3 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 NMNAT1P3-201ENST00000457517 888 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 BX323845.2-201ENST00000458382 234 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 RPS16P9-201ENST00000477220 427 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 RN7SL849P-201ENST00000485236 295 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 AC114956.3-202ENST00000505645 482 ntTSL 5 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 AC008868.1-201ENST00000509786 737 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 RN7SKP11-201ENST00000517018 287 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 IGHVIII-25-1-201ENST00000522143 241 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 AC130366.1-201ENST00000526505 1192 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 AC018845.1-201ENST00000564193 744 ntTSL 2 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 AC007255.2-201ENST00000604053 631 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms