Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 VWDE-206ENST00000614403 4701 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
COL5A3P25940 FTX-215ENST00000638681 9771 ntTSL 5 BASIC8.07□□□□□ -1.12
COL5A3P25940 ATAD5-201ENST00000321990 6869 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
COL5A3P25940 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
COL5A3P25940 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
COL5A3P25940 SUPT7L-201ENST00000337768 4488 ntAPPRIS P3 TSL 1 (best) BASIC8.07□□□□□ -1.12
COL5A3P25940 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC8.07□□□□□ -1.12
COL5A3P25940 TRIM60-204ENST00000512596 1888 ntAPPRIS P1 TSL 2 BASIC8.07□□□□□ -1.12
COL5A3P25940 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC8.07□□□□□ -1.12
COL5A3P25940 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC8.07□□□□□ -1.12
COL5A3P25940 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC8.07□□□□□ -1.12
COL5A3P25940 GAPDHP48-201ENST00000436626 961 ntBASIC8.07□□□□□ -1.12
COL5A3P25940 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
COL5A3P25940 AL355355.1-201ENST00000442900 793 ntBASIC8.07□□□□□ -1.12
COL5A3P25940 HMGN1P36-201ENST00000446623 298 ntBASIC8.07□□□□□ -1.12
COL5A3P25940 HIGD1AP16-201ENST00000450986 258 ntBASIC8.07□□□□□ -1.12
COL5A3P25940 CFL1P4-201ENST00000451536 498 ntBASIC8.07□□□□□ -1.12
COL5A3P25940 RN7SL705P-201ENST00000481678 294 ntBASIC8.07□□□□□ -1.12
COL5A3P25940 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC8.07□□□□□ -1.12
COL5A3P25940 AC027308.1-201ENST00000517993 110 ntBASIC8.07□□□□□ -1.12
COL5A3P25940 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC8.07□□□□□ -1.12
COL5A3P25940 RPA2P1-201ENST00000556557 721 ntBASIC8.07□□□□□ -1.12
COL5A3P25940 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC8.07□□□□□ -1.12
COL5A3P25940 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC8.07□□□□□ -1.12
COL5A3P25940 TARS-201ENST00000265112 4314 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
COL5A3P25940 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
COL5A3P25940 MUC3A-201ENST00000379458 11226 ntAPPRIS P2 TSL 5 BASIC8.07□□□□□ -1.12
COL5A3P25940 SFTPD-AS1-201ENST00000608229 5001 ntBASIC8.07□□□□□ -1.12
COL5A3P25940 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC8.07□□□□□ -1.12
COL5A3P25940 HSPD1P9-201ENST00000420325 1636 ntBASIC8.07□□□□□ -1.12
COL5A3P25940 NCOA4-205ENST00000583565 2371 ntAPPRIS P1 TSL 2 BASIC8.07□□□□□ -1.12
COL5A3P25940 AC011447.6-201ENST00000623510 2598 ntBASIC8.07□□□□□ -1.12
COL5A3P25940 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
COL5A3P25940 TMSB4XP2-201ENST00000335179 210 ntBASIC8.06□□□□□ -1.12
COL5A3P25940 MIR1203-201ENST00000408812 85 ntBASIC8.06□□□□□ -1.12
COL5A3P25940 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC8.06□□□□□ -1.12
COL5A3P25940 AC008753.1-201ENST00000423096 284 ntBASIC8.06□□□□□ -1.12
COL5A3P25940 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC8.06□□□□□ -1.12
COL5A3P25940 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC8.06□□□□□ -1.12
COL5A3P25940 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC8.06□□□□□ -1.12
COL5A3P25940 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC8.06□□□□□ -1.12
COL5A3P25940 RPL7L1P4-201ENST00000513004 707 ntBASIC8.06□□□□□ -1.12
COL5A3P25940 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC8.06□□□□□ -1.12
COL5A3P25940 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC8.06□□□□□ -1.12
COL5A3P25940 OR7E18P-201ENST00000592589 702 ntBASIC8.06□□□□□ -1.12
COL5A3P25940 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC8.06□□□□□ -1.12
COL5A3P25940 AC108673.3-201ENST00000609183 335 ntBASIC8.06□□□□□ -1.12
COL5A3P25940 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC8.06□□□□□ -1.12
COL5A3P25940 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC8.06□□□□□ -1.12
COL5A3P25940 ZBTB21-203ENST00000398499 5806 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
COL5A3P25940 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC8.06□□□□□ -1.12
COL5A3P25940 TNFSF15-202ENST00000374045 6687 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
COL5A3P25940 NFRKB-203ENST00000524794 4351 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
COL5A3P25940 CASC19-228ENST00000641414 1684 ntBASIC8.06□□□□□ -1.12
COL5A3P25940 ZNF423-203ENST00000561648 7907 ntAPPRIS P3 TSL 5 BASIC8.06□□□□□ -1.12
COL5A3P25940 GFPT1-201ENST00000357308 8703 ntTSL 5 BASIC8.06□□□□□ -1.12
COL5A3P25940 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
COL5A3P25940 RAPGEF5-212ENST00000620335 5506 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
COL5A3P25940 CUBNP3-201ENST00000457461 1784 ntBASIC8.06□□□□□ -1.12
COL5A3P25940 KRT73-AS1-203ENST00000552364 3808 ntTSL 2 BASIC8.06□□□□□ -1.12
COL5A3P25940 AC114776.1-201ENST00000414159 4395 ntTSL 5 BASIC8.06□□□□□ -1.12
COL5A3P25940 LINC02367-201ENST00000567749 4388 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
COL5A3P25940 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC8.06□□□□□ -1.12
COL5A3P25940 MAST4-204ENST00000405643 7713 ntAPPRIS ALT2 TSL 5 BASIC8.06□□□□□ -1.12
COL5A3P25940 NKD1-201ENST00000268459 17105 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
COL5A3P25940 IL1RAP-201ENST00000072516 4697 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
COL5A3P25940 AC062029.1-202ENST00000606164 3651 ntBASIC8.06□□□□□ -1.12
COL5A3P25940 ZNF286A-221ENST00000593105 5222 ntTSL 3 BASIC8.06□□□□□ -1.12
COL5A3P25940 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
COL5A3P25940 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC8.06□□□□□ -1.12
COL5A3P25940 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC8.06□□□□□ -1.12
COL5A3P25940 AL391361.1-201ENST00000405580 489 ntBASIC8.06□□□□□ -1.12
COL5A3P25940 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC8.06□□□□□ -1.12
COL5A3P25940 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC8.06□□□□□ -1.12
COL5A3P25940 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC8.06□□□□□ -1.12
COL5A3P25940 AC092375.1-201ENST00000550410 637 ntBASIC8.06□□□□□ -1.12
COL5A3P25940 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC8.06□□□□□ -1.12
COL5A3P25940 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC8.06□□□□□ -1.12
COL5A3P25940 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC8.06□□□□□ -1.12
COL5A3P25940 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC8.06□□□□□ -1.12
COL5A3P25940 SYNJ1-201ENST00000357345 7059 ntAPPRIS ALT2 TSL 5 BASIC8.06□□□□□ -1.12
COL5A3P25940 NSD2-207ENST00000398261 8390 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
COL5A3P25940 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC8.06□□□□□ -1.12
COL5A3P25940 CSMD1-218ENST00000635120 11737 ntAPPRIS P2 TSL 5 BASIC8.06□□□□□ -1.12
COL5A3P25940 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC8.06□□□□□ -1.12
COL5A3P25940 NRP1-207ENST00000374875 5407 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
COL5A3P25940 YME1L1-203ENST00000376016 3856 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
COL5A3P25940 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC8.05□□□□□ -1.12
COL5A3P25940 LUC7L3-208ENST00000505658 7040 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
COL5A3P25940 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
COL5A3P25940 MLYCD-201ENST00000262430 13038 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
COL5A3P25940 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
COL5A3P25940 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC8.05□□□□□ -1.12
COL5A3P25940 FKBP15-201ENST00000238256 4336 ntAPPRIS P2 TSL 1 (best) BASIC8.05□□□□□ -1.12
COL5A3P25940 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
COL5A3P25940 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC8.05□□□□□ -1.12
COL5A3P25940 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
COL5A3P25940 LTBP1-207ENST00000418533 5164 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
COL5A3P25940 RNF152-201ENST00000312828 9501 ntAPPRIS P1 TSL 2 BASIC8.05□□□□□ -1.12
COL5A3P25940 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC8.05□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms