Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 AC006539.1-201ENST00000481419 501 ntBASIC2.07□□□□□ -2.08
SYNE1Q8NF91 CENPK-211ENST00000510693 1040 ntTSL 5 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 STX18-IT1-201ENST00000515487 542 ntTSL 4 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 TRIM51DP-201ENST00000529746 596 ntBASIC2.07□□□□□ -2.08
SYNE1Q8NF91 TOMM20P1-201ENST00000534518 427 ntBASIC2.07□□□□□ -2.08
SYNE1Q8NF91 CYP4A44P-201ENST00000569984 154 ntBASIC2.07□□□□□ -2.08
SYNE1Q8NF91 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 AL161729.2-201ENST00000605700 456 ntBASIC2.07□□□□□ -2.08
SYNE1Q8NF91 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 PRDX6-201ENST00000340385 1751 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 LINC02210-213ENST00000591271 9678 ntTSL 3 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 FO393409.1-201ENST00000399325 1372 ntBASIC2.07□□□□□ -2.08
SYNE1Q8NF91 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 ARHGAP42P5-201ENST00000548856 2936 ntBASIC2.07□□□□□ -2.08
SYNE1Q8NF91 AL034417.4-202ENST00000642135 2236 ntBASIC2.07□□□□□ -2.08
SYNE1Q8NF91 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 RN7SL552P-201ENST00000462094 276 ntBASIC2.07□□□□□ -2.08
SYNE1Q8NF91 PFN2-213ENST00000494827 793 ntTSL 4 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 AC120036.3-201ENST00000517826 292 ntBASIC2.07□□□□□ -2.08
SYNE1Q8NF91 AC027308.1-201ENST00000517993 110 ntBASIC2.07□□□□□ -2.08
SYNE1Q8NF91 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 MIR4701-201ENST00000583094 63 ntBASIC2.07□□□□□ -2.08
SYNE1Q8NF91 AL590032.1-201ENST00000604920 252 ntBASIC2.07□□□□□ -2.08
SYNE1Q8NF91 AC109309.2-201ENST00000612597 332 ntBASIC2.07□□□□□ -2.08
SYNE1Q8NF91 OR4M2-201ENST00000614722 1133 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 NOSTRIN-202ENST00000397206 1446 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 MSL3-206ENST00000380693 2377 ntTSL 2 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 ASPA-201ENST00000263080 5431 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 AC093591.2-201ENST00000565254 3843 ntBASIC2.07□□□□□ -2.08
SYNE1Q8NF91 ITSN2-213ENST00000622089 5805 ntTSL 5 BASIC2.07□□□□□ -2.08
SYNE1Q8NF91 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 IL5RA-204ENST00000418488 5521 ntTSL 5 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 RNA5SP474-201ENST00000391234 90 ntBASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AL512422.1-201ENST00000407033 553 ntBASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 UBBP5-201ENST00000446970 266 ntBASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AC004890.1-201ENST00000461005 181 ntBASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AC104339.1-201ENST00000465478 348 ntBASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AC011891.2-201ENST00000604949 397 ntBASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AC114477.1-201ENST00000605097 605 ntBASIC2.06□□□□□ -2.08
SYNE1Q8NF91 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 NHLRC2-201ENST00000369301 11051 ntAPPRIS P1 TSL 2 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AC019270.1-201ENST00000523495 3488 ntTSL 5 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 NEK5-201ENST00000355568 2918 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 RNA5SP85-201ENST00000365378 119 ntBASIC2.06□□□□□ -2.08
SYNE1Q8NF91 NALCN-202ENST00000376200 1126 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AC003045.1-201ENST00000398779 713 ntBASIC2.06□□□□□ -2.08
SYNE1Q8NF91 CHCHD3P1-201ENST00000425516 676 ntBASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AL137220.1-201ENST00000431369 661 ntTSL 2 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 GAPDHP20-201ENST00000444107 1007 ntBASIC2.06□□□□□ -2.08
SYNE1Q8NF91 HMGN1P2-201ENST00000445197 310 ntBASIC2.06□□□□□ -2.08
SYNE1Q8NF91 ENTPD3-AS1-204ENST00000452768 724 ntTSL 2 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AC108043.1-201ENST00000512696 574 ntBASIC2.06□□□□□ -2.08
SYNE1Q8NF91 BTF3P1-201ENST00000522014 495 ntBASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AC084026.1-201ENST00000522028 564 ntTSL 4 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AC020892.1-201ENST00000559918 855 ntTSL 2 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 RPS11-205ENST00000599561 430 ntTSL 5 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 AC026367.2-201ENST00000610630 553 ntBASIC2.06□□□□□ -2.08
SYNE1Q8NF91 P3H2-203ENST00000427335 2963 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 CYP4F30P-203ENST00000438109 2250 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 TMEM138-209ENST00000542946 2839 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
SYNE1Q8NF91 OR7A2P-201ENST00000304105 930 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms