Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC7.02□□□□□ -1.29
PTPN9P43378 PRELID3BP3-201ENST00000584963 545 ntBASIC7.02□□□□□ -1.29
PTPN9P43378 AL137000.1-201ENST00000610528 1244 ntBASIC7.02□□□□□ -1.29
PTPN9P43378 AC020658.4-201ENST00000613987 684 ntBASIC7.02□□□□□ -1.29
PTPN9P43378 Six3os1_4.1-201ENST00000615706 324 ntBASIC7.02□□□□□ -1.29
PTPN9P43378 AC073862.4-201ENST00000622982 854 ntBASIC7.02□□□□□ -1.29
PTPN9P43378 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC7.02□□□□□ -1.29
PTPN9P43378 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC7.02□□□□□ -1.29
PTPN9P43378 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
PTPN9P43378 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
PTPN9P43378 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC7.02□□□□□ -1.29
PTPN9P43378 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC7.02□□□□□ -1.29
PTPN9P43378 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC7.02□□□□□ -1.29
PTPN9P43378 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
PTPN9P43378 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC7.02□□□□□ -1.29
PTPN9P43378 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC7.02□□□□□ -1.29
PTPN9P43378 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC7.02□□□□□ -1.29
PTPN9P43378 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
PTPN9P43378 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC7.02□□□□□ -1.29
PTPN9P43378 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC7.01□□□□□ -1.29
PTPN9P43378 AADAC-201ENST00000232892 1642 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
PTPN9P43378 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
PTPN9P43378 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC7.01□□□□□ -1.29
PTPN9P43378 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC7.01□□□□□ -1.29
PTPN9P43378 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
PTPN9P43378 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
PTPN9P43378 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
PTPN9P43378 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC7.01□□□□□ -1.29
PTPN9P43378 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
PTPN9P43378 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC7.01□□□□□ -1.29
PTPN9P43378 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC7.01□□□□□ -1.29
PTPN9P43378 GKN2-202ENST00000481498 1498 ntTSL 2 BASIC7.01□□□□□ -1.29
PTPN9P43378 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
PTPN9P43378 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
PTPN9P43378 RN7SKP191-201ENST00000364713 306 ntBASIC7.01□□□□□ -1.29
PTPN9P43378 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC7.01□□□□□ -1.29
PTPN9P43378 RPS7P12-201ENST00000422385 582 ntBASIC7.01□□□□□ -1.29
PTPN9P43378 AHCYP8-201ENST00000425108 209 ntBASIC7.01□□□□□ -1.29
PTPN9P43378 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC7.01□□□□□ -1.29
PTPN9P43378 AC009244.1-201ENST00000450566 258 ntBASIC7.01□□□□□ -1.29
PTPN9P43378 SLAMF6P1-201ENST00000451067 602 ntBASIC7.01□□□□□ -1.29
PTPN9P43378 AC044784.1-201ENST00000456526 677 ntTSL 3 BASIC7.01□□□□□ -1.29
PTPN9P43378 TREML3P-201ENST00000457327 501 ntBASIC7.01□□□□□ -1.29
PTPN9P43378 RPL7AP23-201ENST00000482625 776 ntBASIC7.01□□□□□ -1.29
PTPN9P43378 AC063943.2-201ENST00000495697 534 ntBASIC7.01□□□□□ -1.29
PTPN9P43378 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC7.01□□□□□ -1.29
PTPN9P43378 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC7.01□□□□□ -1.29
PTPN9P43378 AC007068.2-201ENST00000543168 395 ntBASIC7.01□□□□□ -1.29
PTPN9P43378 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC7.01□□□□□ -1.29
PTPN9P43378 AC023161.1-201ENST00000549532 420 ntTSL 3 BASIC7.01□□□□□ -1.29
PTPN9P43378 AL445383.1-201ENST00000554689 874 ntBASIC7.01□□□□□ -1.29
PTPN9P43378 AC091304.4-201ENST00000565703 620 ntBASIC7.01□□□□□ -1.29
PTPN9P43378 OR7E19P-202ENST00000589942 844 ntBASIC7.01□□□□□ -1.29
PTPN9P43378 AL359704.2-201ENST00000604335 521 ntBASIC7.01□□□□□ -1.29
PTPN9P43378 AL445647.2-201ENST00000615170 130 ntBASIC7.01□□□□□ -1.29
PTPN9P43378 AC061999.1-201ENST00000624454 177 ntBASIC7.01□□□□□ -1.29
PTPN9P43378 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
PTPN9P43378 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
PTPN9P43378 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC7.01□□□□□ -1.29
PTPN9P43378 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC7.01□□□□□ -1.29
PTPN9P43378 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
PTPN9P43378 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
PTPN9P43378 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
PTPN9P43378 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC7.01□□□□□ -1.29
PTPN9P43378 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC7.01□□□□□ -1.29
PTPN9P43378 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
PTPN9P43378 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
PTPN9P43378 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
PTPN9P43378 CUBNP3-201ENST00000457461 1784 ntBASIC7□□□□□ -1.29
PTPN9P43378 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC7□□□□□ -1.29
PTPN9P43378 TEAD1-201ENST00000334310 3075 ntTSL 1 (best) BASIC7□□□□□ -1.29
PTPN9P43378 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC7□□□□□ -1.29
PTPN9P43378 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC7□□□□□ -1.29
PTPN9P43378 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC7□□□□□ -1.29
PTPN9P43378 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
PTPN9P43378 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
PTPN9P43378 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC7□□□□□ -1.29
PTPN9P43378 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
PTPN9P43378 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC7□□□□□ -1.29
PTPN9P43378 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC7□□□□□ -1.29
PTPN9P43378 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC7□□□□□ -1.29
PTPN9P43378 RNA5SP382-201ENST00000363355 112 ntBASIC7□□□□□ -1.29
PTPN9P43378 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC7□□□□□ -1.29
PTPN9P43378 RN7SKP296-201ENST00000411185 341 ntBASIC7□□□□□ -1.29
PTPN9P43378 NFYAP1-201ENST00000431953 972 ntBASIC7□□□□□ -1.29
PTPN9P43378 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC7□□□□□ -1.29
PTPN9P43378 AC104162.1-204ENST00000443346 708 ntTSL 3 BASIC7□□□□□ -1.29
PTPN9P43378 LRRC28-203ENST00000447360 1235 ntTSL 1 (best) BASIC7□□□□□ -1.29
PTPN9P43378 RPL26P30-201ENST00000453533 435 ntBASIC7□□□□□ -1.29
PTPN9P43378 AC068647.2-202ENST00000485020 390 ntTSL 3 BASIC7□□□□□ -1.29
PTPN9P43378 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC7□□□□□ -1.29
PTPN9P43378 IQCH-203ENST00000512104 1000 ntTSL 2 BASIC7□□□□□ -1.29
PTPN9P43378 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC7□□□□□ -1.29
PTPN9P43378 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC7□□□□□ -1.29
PTPN9P43378 OR52H2P-201ENST00000514607 902 ntBASIC7□□□□□ -1.29
PTPN9P43378 AP000426.1-201ENST00000518749 361 ntTSL 3 BASIC7□□□□□ -1.29
PTPN9P43378 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC7□□□□□ -1.29
PTPN9P43378 AC091096.2-201ENST00000523284 587 ntTSL 3 BASIC7□□□□□ -1.29
PTPN9P43378 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC7□□□□□ -1.29
PTPN9P43378 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC7□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms