Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC093720.1-201ENST00000505681 714 ntBASIC6.74□□□□□ -1.33
MSX2P35548 HSD17B11-203ENST00000507286 851 ntTSL 5 BASIC6.74□□□□□ -1.33
MSX2P35548 PGAM4P2-201ENST00000512491 721 ntBASIC6.74□□□□□ -1.33
MSX2P35548 AC093668.1-201ENST00000514917 911 ntAPPRIS P1 TSL 3 BASIC6.74□□□□□ -1.33
MSX2P35548 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC6.74□□□□□ -1.33
MSX2P35548 MTATP6P15-201ENST00000527233 835 ntBASIC6.74□□□□□ -1.33
MSX2P35548 OR4A21P-201ENST00000532759 944 ntBASIC6.74□□□□□ -1.33
MSX2P35548 AC244502.1-205ENST00000535351 571 ntTSL 4 BASIC6.74□□□□□ -1.33
MSX2P35548 AP000619.1-201ENST00000540293 1000 ntBASIC6.74□□□□□ -1.33
MSX2P35548 AC016144.1-201ENST00000548175 1087 ntBASIC6.74□□□□□ -1.33
MSX2P35548 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC6.74□□□□□ -1.33
MSX2P35548 FXNP1-201ENST00000555153 337 ntBASIC6.74□□□□□ -1.33
MSX2P35548 AC078905.1-201ENST00000560803 509 ntTSL 3 BASIC6.74□□□□□ -1.33
MSX2P35548 MRPL45P2-203ENST00000573318 473 ntBASIC6.74□□□□□ -1.33
MSX2P35548 MIR4793-201ENST00000577502 87 ntBASIC6.74□□□□□ -1.33
MSX2P35548 AP001357.1-201ENST00000586304 1053 ntBASIC6.74□□□□□ -1.33
MSX2P35548 C10orf82-203ENST00000588184 852 ntAPPRIS ALT2 TSL 3 BASIC6.74□□□□□ -1.33
MSX2P35548 AC068620.3-201ENST00000602749 560 ntBASIC6.74□□□□□ -1.33
MSX2P35548 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC6.74□□□□□ -1.33
MSX2P35548 MIR205HG-210ENST00000603283 455 ntTSL 3 BASIC6.74□□□□□ -1.33
MSX2P35548 AC018737.1-201ENST00000603900 204 ntBASIC6.74□□□□□ -1.33
MSX2P35548 GAS2-210ENST00000630668 674 ntTSL 5 BASIC6.74□□□□□ -1.33
MSX2P35548 SMG7-216ENST00000638826 219 ntTSL 2 BASIC6.74□□□□□ -1.33
MSX2P35548 HHLA2-201ENST00000357759 2666 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX2P35548 TNPO1P2-201ENST00000426249 2665 ntBASIC6.74□□□□□ -1.33
MSX2P35548 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX2P35548 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.74□□□□□ -1.33
MSX2P35548 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
MSX2P35548 GNE-205ENST00000539815 3657 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX2P35548 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC6.74□□□□□ -1.33
MSX2P35548 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
MSX2P35548 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX2P35548 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC6.74□□□□□ -1.33
MSX2P35548 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
MSX2P35548 SORBS1-209ENST00000371245 2779 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX2P35548 AL132656.3-201ENST00000606384 1595 ntBASIC6.74□□□□□ -1.33
MSX2P35548 IARS-205ENST00000443024 4341 ntTSL 5 BASIC6.73□□□□□ -1.33
MSX2P35548 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 DNAI1-201ENST00000242317 2504 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX2P35548 MMACHC-203ENST00000616135 1510 ntTSL 2 BASIC6.73□□□□□ -1.33
MSX2P35548 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
MSX2P35548 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
MSX2P35548 OR51M1-201ENST00000328611 1058 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
MSX2P35548 IL17F-201ENST00000336123 850 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 HMGN2-201ENST00000361427 1191 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 RNU1-47P-201ENST00000362966 163 ntBASIC6.73□□□□□ -1.33
MSX2P35548 RNU6-670P-201ENST00000364312 104 ntBASIC6.73□□□□□ -1.33
MSX2P35548 RPS24-202ENST00000372360 510 ntAPPRIS P4 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 IFNA16-201ENST00000380216 939 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
MSX2P35548 MRPS33-202ENST00000393008 853 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 CCNB2P1-201ENST00000399411 1150 ntBASIC6.73□□□□□ -1.33
MSX2P35548 MTCO2P31-201ENST00000402702 684 ntBASIC6.73□□□□□ -1.33
MSX2P35548 AL359885.1-201ENST00000415786 903 ntBASIC6.73□□□□□ -1.33
MSX2P35548 AC005005.2-201ENST00000420779 380 ntBASIC6.73□□□□□ -1.33
MSX2P35548 GRM7-AS2-201ENST00000427748 520 ntTSL 2 BASIC6.73□□□□□ -1.33
MSX2P35548 RPL7P7-201ENST00000428803 703 ntBASIC6.73□□□□□ -1.33
MSX2P35548 RPL5P27-201ENST00000437011 881 ntBASIC6.73□□□□□ -1.33
MSX2P35548 AL158168.1-201ENST00000443282 357 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX2P35548 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC6.73□□□□□ -1.33
MSX2P35548 MORF4L1P4-201ENST00000450245 976 ntBASIC6.73□□□□□ -1.33
MSX2P35548 LINC01320-202ENST00000453774 1205 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX2P35548 PSPC1P2-201ENST00000455130 225 ntBASIC6.73□□□□□ -1.33
MSX2P35548 snoU109.3-201ENST00000459477 145 ntBASIC6.73□□□□□ -1.33
MSX2P35548 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 AC009269.1-201ENST00000470368 833 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX2P35548 AC020898.1-201ENST00000474167 787 ntBASIC6.73□□□□□ -1.33
MSX2P35548 RPL23AP82-208ENST00000496652 1112 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC6.73□□□□□ -1.33
MSX2P35548 NMNAT1P4-201ENST00000505598 840 ntBASIC6.73□□□□□ -1.33
MSX2P35548 NAMPTP2-201ENST00000505629 1115 ntBASIC6.73□□□□□ -1.33
MSX2P35548 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC6.73□□□□□ -1.33
MSX2P35548 AC112673.1-201ENST00000513168 575 ntBASIC6.73□□□□□ -1.33
MSX2P35548 LINC01288-201ENST00000519189 529 ntTSL 4 BASIC6.73□□□□□ -1.33
MSX2P35548 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX2P35548 SOX5P1-201ENST00000524155 1127 ntBASIC6.73□□□□□ -1.33
MSX2P35548 AC053513.1-201ENST00000543604 738 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX2P35548 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX2P35548 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX2P35548 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX2P35548 AC009119.1-204ENST00000561599 564 ntTSL 4 BASIC6.73□□□□□ -1.33
MSX2P35548 DNM1P31-201ENST00000564149 696 ntBASIC6.73□□□□□ -1.33
MSX2P35548 SAXO2-204ENST00000565432 811 ntAPPRIS ALT2 TSL 4 BASIC6.73□□□□□ -1.33
MSX2P35548 MCM3AP-AS1-207ENST00000588753 589 ntTSL 4 BASIC6.73□□□□□ -1.33
MSX2P35548 AP001160.4-201ENST00000596971 382 ntBASIC6.73□□□□□ -1.33
MSX2P35548 AC093063.1-201ENST00000599317 363 ntBASIC6.73□□□□□ -1.33
MSX2P35548 AC027334.1-201ENST00000603257 310 ntBASIC6.73□□□□□ -1.33
MSX2P35548 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC6.73□□□□□ -1.33
MSX2P35548 MIR6761-201ENST00000617899 72 ntBASIC6.73□□□□□ -1.33
MSX2P35548 AL355493.4-201ENST00000618530 292 ntBASIC6.73□□□□□ -1.33
MSX2P35548 AC026367.3-201ENST00000619032 590 ntBASIC6.73□□□□□ -1.33
MSX2P35548 AC007275.1-201ENST00000621243 671 ntBASIC6.73□□□□□ -1.33
MSX2P35548 uc_338.21-201ENST00000622458 147 ntBASIC6.73□□□□□ -1.33
MSX2P35548 AC097460.3-201ENST00000623099 442 ntBASIC6.73□□□□□ -1.33
MSX2P35548 WDR11-AS1-207ENST00000630905 769 ntTSL 2 BASIC6.73□□□□□ -1.33
MSX2P35548 LINC00466-206ENST00000634576 1279 ntTSL 5 BASIC6.73□□□□□ -1.33
MSX2P35548 RPS27L-208ENST00000635699 693 ntTSL 5 BASIC6.73□□□□□ -1.33
MSX2P35548 RPL36AP21-202ENST00000639134 430 ntBASIC6.73□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms