Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PCA3_2.1-201ENST00000612507 409 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 RN7SL126P-201ENST00000616400 299 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 AP005212.3-201ENST00000619964 528 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 AC120057.5-201ENST00000623840 154 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 AL049541.2-201ENST00000626377 555 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 ASB8-218ENST00000629941 278 ntTSL 5 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
NKX3-1Q99801 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
NKX3-1Q99801 LDHA-206ENST00000430553 1310 ntTSL 2 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
NKX3-1Q99801 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
NKX3-1Q99801 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
NKX3-1Q99801 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
NKX3-1Q99801 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 COG2-209ENST00000534989 2963 ntTSL 2 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 AC125232.1-201ENST00000452554 1408 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
NKX3-1Q99801 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
NKX3-1Q99801 DYDC2-201ENST00000256039 1842 ntAPPRIS P3 TSL 2 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 AP000866.6-201ENST00000638898 3579 ntBASIC5.9□□□□□ -1.46
NKX3-1Q99801 TEK-202ENST00000406359 3935 ntTSL 2 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
NKX3-1Q99801 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
NKX3-1Q99801 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
NKX3-1Q99801 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
NKX3-1Q99801 AC079949.2-201ENST00000617117 2933 ntBASIC5.9□□□□□ -1.46
NKX3-1Q99801 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
NKX3-1Q99801 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 CREM-217ENST00000439705 2306 ntTSL 5 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 AP001157.1-201ENST00000550837 2339 ntBASIC5.9□□□□□ -1.46
NKX3-1Q99801 OR5A1-201ENST00000302030 1051 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
NKX3-1Q99801 RPS21P8-201ENST00000413365 247 ntBASIC5.9□□□□□ -1.46
NKX3-1Q99801 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 ZBTB8OSP2-201ENST00000423890 504 ntBASIC5.9□□□□□ -1.46
NKX3-1Q99801 RPL14P5-201ENST00000436474 730 ntBASIC5.9□□□□□ -1.46
NKX3-1Q99801 AL158214.1-201ENST00000444423 404 ntBASIC5.9□□□□□ -1.46
NKX3-1Q99801 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 RN7SL379P-201ENST00000479912 293 ntBASIC5.9□□□□□ -1.46
NKX3-1Q99801 AC068522.1-201ENST00000482895 345 ntBASIC5.9□□□□□ -1.46
NKX3-1Q99801 RN7SL561P-201ENST00000488553 281 ntBASIC5.9□□□□□ -1.46
NKX3-1Q99801 AC063943.2-201ENST00000495697 534 ntBASIC5.9□□□□□ -1.46
NKX3-1Q99801 VPS37A-208ENST00000521005 479 ntTSL 3 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 OR4A13P-201ENST00000529316 942 ntBASIC5.9□□□□□ -1.46
NKX3-1Q99801 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
NKX3-1Q99801 AC092718.2-202ENST00000566390 556 ntTSL 4 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
NKX3-1Q99801 AC011824.1-201ENST00000584863 561 ntTSL 4 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 AC011498.1-203ENST00000589066 359 ntTSL 3 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 AC024085.1-201ENST00000604299 432 ntBASIC5.9□□□□□ -1.46
NKX3-1Q99801 ZRANB2-AS2-220ENST00000623721 1133 ntTSL 5 BASIC5.9□□□□□ -1.46
NKX3-1Q99801 AC138627.1-204ENST00000641894 765 ntBASIC5.9□□□□□ -1.46
NKX3-1Q99801 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC5.9□□□□□ -1.47
NKX3-1Q99801 AC129502.1-201ENST00000623261 1654 ntBASIC5.9□□□□□ -1.47
NKX3-1Q99801 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC5.9□□□□□ -1.47
NKX3-1Q99801 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
NKX3-1Q99801 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.47
NKX3-1Q99801 AC119674.1-204ENST00000641348 1343 ntBASIC5.9□□□□□ -1.47
NKX3-1Q99801 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC5.9□□□□□ -1.47
NKX3-1Q99801 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC5.9□□□□□ -1.47
NKX3-1Q99801 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
NKX3-1Q99801 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
NKX3-1Q99801 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
NKX3-1Q99801 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.47
NKX3-1Q99801 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.47
NKX3-1Q99801 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
NKX3-1Q99801 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
NKX3-1Q99801 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
NKX3-1Q99801 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 AC022034.1-201ENST00000512867 2156 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
NKX3-1Q99801 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
NKX3-1Q99801 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
NKX3-1Q99801 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
NKX3-1Q99801 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
NKX3-1Q99801 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
NKX3-1Q99801 RPL24P4-201ENST00000326586 421 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
NKX3-1Q99801 RNA5SP65-201ENST00000363166 119 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 RN7SKP77-201ENST00000363261 353 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 XAGE5-202ENST00000375501 415 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 MIR152-201ENST00000385212 87 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 MIR431-201ENST00000385266 114 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 S100B-203ENST00000397648 839 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
NKX3-1Q99801 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 MIR541-201ENST00000401360 84 ntBASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms