Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC7.2□□□□□ -1.26
USP39Q53GS9 ZNF540-206ENST00000589117 2349 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 PSORS1C1-201ENST00000259881 908 ntAPPRIS P2 TSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 GINS4-201ENST00000276533 3841 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 ABRAXAS2-201ENST00000298492 2992 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 TRAV12-3-201ENST00000390442 399 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
USP39Q53GS9 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 SUMO2P13-201ENST00000403109 272 ntBASIC7.2□□□□□ -1.26
USP39Q53GS9 AC114752.2-201ENST00000424119 404 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC7.2□□□□□ -1.26
USP39Q53GS9 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC7.2□□□□□ -1.26
USP39Q53GS9 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC7.2□□□□□ -1.26
USP39Q53GS9 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC7.2□□□□□ -1.26
USP39Q53GS9 RPS18P1-201ENST00000447840 458 ntBASIC7.2□□□□□ -1.26
USP39Q53GS9 FCF1P6-201ENST00000456841 595 ntBASIC7.2□□□□□ -1.26
USP39Q53GS9 RN7SL180P-201ENST00000466769 294 ntBASIC7.2□□□□□ -1.26
USP39Q53GS9 RN7SL143P-201ENST00000496780 297 ntBASIC7.2□□□□□ -1.26
USP39Q53GS9 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC7.2□□□□□ -1.26
USP39Q53GS9 AC026774.2-201ENST00000513990 1098 ntBASIC7.2□□□□□ -1.26
USP39Q53GS9 RN7SKP183-201ENST00000517169 324 ntBASIC7.2□□□□□ -1.26
USP39Q53GS9 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC7.2□□□□□ -1.26
USP39Q53GS9 AC100768.2-201ENST00000534068 683 ntTSL 3 BASIC7.2□□□□□ -1.26
USP39Q53GS9 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC7.2□□□□□ -1.26
USP39Q53GS9 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC7.2□□□□□ -1.26
USP39Q53GS9 ZNF525-206ENST00000593918 590 ntTSL 5 BASIC7.2□□□□□ -1.26
USP39Q53GS9 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC7.2□□□□□ -1.26
USP39Q53GS9 AC073389.3-201ENST00000609434 935 ntBASIC7.2□□□□□ -1.26
USP39Q53GS9 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC7.2□□□□□ -1.26
USP39Q53GS9 VIPR1-AS1-221ENST00000626992 602 ntTSL 5 BASIC7.2□□□□□ -1.26
USP39Q53GS9 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC7.2□□□□□ -1.26
USP39Q53GS9 AL009031.1-201ENST00000632346 1026 ntTSL 2 BASIC7.2□□□□□ -1.26
USP39Q53GS9 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC7.2□□□□□ -1.26
USP39Q53GS9 AC116631.1-202ENST00000640984 683 ntBASIC7.2□□□□□ -1.26
USP39Q53GS9 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
USP39Q53GS9 TP63-207ENST00000418709 2810 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC7.2□□□□□ -1.26
USP39Q53GS9 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC7.2□□□□□ -1.26
USP39Q53GS9 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 MELK-211ENST00000545008 2236 ntTSL 2 BASIC7.2□□□□□ -1.26
USP39Q53GS9 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC7.2□□□□□ -1.26
USP39Q53GS9 DPCR1-201ENST00000304311 2658 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
USP39Q53GS9 AC011374.1-201ENST00000564471 1567 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 OR1L8-202ENST00000641027 2024 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
USP39Q53GS9 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
USP39Q53GS9 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 EEF1A1P26-201ENST00000458319 1363 ntBASIC7.2□□□□□ -1.26
USP39Q53GS9 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
USP39Q53GS9 ADAMTS9-AS2-202ENST00000474768 2388 ntTSL 2 BASIC7.19□□□□□ -1.26
USP39Q53GS9 ADAM3A-207ENST00000490268 2627 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
USP39Q53GS9 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
USP39Q53GS9 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
USP39Q53GS9 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC7.19□□□□□ -1.26
USP39Q53GS9 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC7.19□□□□□ -1.26
USP39Q53GS9 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
USP39Q53GS9 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
USP39Q53GS9 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
USP39Q53GS9 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC7.19□□□□□ -1.26
USP39Q53GS9 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
USP39Q53GS9 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
USP39Q53GS9 DEFB119-201ENST00000339144 484 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
USP39Q53GS9 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC7.19□□□□□ -1.26
USP39Q53GS9 RPL18AP14-201ENST00000417685 526 ntBASIC7.19□□□□□ -1.26
USP39Q53GS9 OR4A8-201ENST00000418689 945 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
USP39Q53GS9 AL139042.1-201ENST00000429137 305 ntTSL 3 BASIC7.19□□□□□ -1.26
USP39Q53GS9 AL138899.2-201ENST00000439139 499 ntBASIC7.19□□□□□ -1.26
USP39Q53GS9 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC7.19□□□□□ -1.26
USP39Q53GS9 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC7.19□□□□□ -1.26
USP39Q53GS9 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC7.19□□□□□ -1.26
USP39Q53GS9 AC092106.1-201ENST00000444291 373 ntBASIC7.19□□□□□ -1.26
USP39Q53GS9 RPSAP7-201ENST00000456871 885 ntBASIC7.19□□□□□ -1.26
USP39Q53GS9 AP000926.3-201ENST00000497201 299 ntBASIC7.19□□□□□ -1.26
USP39Q53GS9 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC7.19□□□□□ -1.26
USP39Q53GS9 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC7.19□□□□□ -1.26
USP39Q53GS9 IGLVVII-41-1-201ENST00000518405 151 ntBASIC7.19□□□□□ -1.26
USP39Q53GS9 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC7.19□□□□□ -1.26
USP39Q53GS9 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC7.19□□□□□ -1.26
USP39Q53GS9 AL136018.1-202ENST00000555300 488 ntTSL 5 BASIC7.19□□□□□ -1.26
USP39Q53GS9 AC107958.1-201ENST00000556576 290 ntBASIC7.19□□□□□ -1.26
USP39Q53GS9 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC7.19□□□□□ -1.26
USP39Q53GS9 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC7.19□□□□□ -1.26
USP39Q53GS9 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC7.19□□□□□ -1.26
USP39Q53GS9 AC006305.1-201ENST00000382897 2558 ntTSL 2 BASIC7.19□□□□□ -1.26
USP39Q53GS9 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
USP39Q53GS9 DUXAP8-203ENST00000437781 2398 ntTSL 2 BASIC7.19□□□□□ -1.26
USP39Q53GS9 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
USP39Q53GS9 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
USP39Q53GS9 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC7.19□□□□□ -1.26
USP39Q53GS9 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
USP39Q53GS9 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC7.19□□□□□ -1.26
USP39Q53GS9 ACTA2-AS1-201ENST00000437930 2450 ntTSL 2 BASIC7.19□□□□□ -1.26
USP39Q53GS9 AL445523.1-201ENST00000451184 1362 ntBASIC7.19□□□□□ -1.26
USP39Q53GS9 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
USP39Q53GS9 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC7.19□□□□□ -1.26
USP39Q53GS9 AC005614.1-201ENST00000598952 3653 ntBASIC7.19□□□□□ -1.26
USP39Q53GS9 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 SLC26A5-206ENST00000393727 2270 ntAPPRIS ALT1 TSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 9.8 ms