Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CDY9P-201ENST00000451397 1580 ntBASIC6.77□□□□□ -1.33
MSX2P35548 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX2P35548 AL139384.2-201ENST00000613809 3590 ntBASIC6.77□□□□□ -1.33
MSX2P35548 AL021877.2-201ENST00000624442 10684 ntBASIC6.76□□□□□ -1.33
MSX2P35548 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
MSX2P35548 TRDMT1-210ENST00000488990 1301 ntTSL 2 BASIC6.76□□□□□ -1.33
MSX2P35548 AP002833.3-201ENST00000625075 2265 ntBASIC6.76□□□□□ -1.33
MSX2P35548 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6.76□□□□□ -1.33
MSX2P35548 NUMB-231ENST00000559312 1439 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC6.76□□□□□ -1.33
MSX2P35548 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC6.76□□□□□ -1.33
MSX2P35548 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
MSX2P35548 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 RNA5SP71-201ENST00000362967 126 ntBASIC6.76□□□□□ -1.33
MSX2P35548 AL390760.1-201ENST00000366188 410 ntTSL 5 BASIC6.76□□□□□ -1.33
MSX2P35548 AL358178.1-201ENST00000407698 397 ntBASIC6.76□□□□□ -1.33
MSX2P35548 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX2P35548 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX2P35548 AL157402.1-201ENST00000429469 363 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX2P35548 LINC01852-201ENST00000434223 967 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 AC244505.2-201ENST00000435089 759 ntBASIC6.76□□□□□ -1.33
MSX2P35548 AC104698.1-201ENST00000435671 276 ntBASIC6.76□□□□□ -1.33
MSX2P35548 MTCYBP31-201ENST00000438855 1122 ntBASIC6.76□□□□□ -1.33
MSX2P35548 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC6.76□□□□□ -1.33
MSX2P35548 PRDX1P1-201ENST00000449329 596 ntBASIC6.76□□□□□ -1.33
MSX2P35548 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX2P35548 RN7SL251P-201ENST00000464175 297 ntBASIC6.76□□□□□ -1.33
MSX2P35548 THUMPD3-AS1-205ENST00000481221 683 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX2P35548 GGTA1P-204ENST00000488429 1104 ntBASIC6.76□□□□□ -1.33
MSX2P35548 AL031864.2-201ENST00000498507 350 ntBASIC6.76□□□□□ -1.33
MSX2P35548 RBBP4P1-201ENST00000502424 1276 ntBASIC6.76□□□□□ -1.33
MSX2P35548 LINC01182-201ENST00000503532 582 ntTSL 4 BASIC6.76□□□□□ -1.33
MSX2P35548 MTCYBP35-201ENST00000503630 1137 ntBASIC6.76□□□□□ -1.33
MSX2P35548 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX2P35548 GAPDHP31-201ENST00000509325 1014 ntBASIC6.76□□□□□ -1.33
MSX2P35548 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC6.76□□□□□ -1.33
MSX2P35548 MTCO3P28-201ENST00000513351 515 ntBASIC6.76□□□□□ -1.33
MSX2P35548 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 AC091820.2-201ENST00000521697 523 ntTSL 4 BASIC6.76□□□□□ -1.33
MSX2P35548 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX2P35548 IGKV2OR22-4-201ENST00000523309 367 ntBASIC6.76□□□□□ -1.33
MSX2P35548 AC055736.1-201ENST00000548135 629 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX2P35548 AC135626.1-201ENST00000556983 435 ntBASIC6.76□□□□□ -1.33
MSX2P35548 AL118558.1-201ENST00000557551 566 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX2P35548 AC008870.2-201ENST00000568262 1024 ntBASIC6.76□□□□□ -1.33
MSX2P35548 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX2P35548 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC6.76□□□□□ -1.33
MSX2P35548 LINC00663-205ENST00000589508 432 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX2P35548 AC015802.4-202ENST00000591967 474 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX2P35548 AC010605.1-201ENST00000597303 797 ntTSL 2 BASIC6.76□□□□□ -1.33
MSX2P35548 NIFKP6-201ENST00000598115 845 ntBASIC6.76□□□□□ -1.33
MSX2P35548 PINLYP-206ENST00000599207 712 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
MSX2P35548 SNORA35B-201ENST00000607417 129 ntBASIC6.76□□□□□ -1.33
MSX2P35548 AC006547.1-211ENST00000609191 828 ntTSL 5 BASIC6.76□□□□□ -1.33
MSX2P35548 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC6.76□□□□□ -1.33
MSX2P35548 AC127071.2-201ENST00000623293 527 ntBASIC6.76□□□□□ -1.33
MSX2P35548 AP002967.1-201ENST00000624203 539 ntBASIC6.76□□□□□ -1.33
MSX2P35548 AC093495.1-212ENST00000630173 1162 ntTSL 5 BASIC6.76□□□□□ -1.33
MSX2P35548 AC241377.2-202ENST00000636462 997 ntBASIC6.76□□□□□ -1.33
MSX2P35548 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 RNGTT-203ENST00000538899 1374 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC6.76□□□□□ -1.33
MSX2P35548 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
MSX2P35548 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC6.76□□□□□ -1.33
MSX2P35548 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 AC022905.1-201ENST00000503430 3048 ntBASIC6.76□□□□□ -1.33
MSX2P35548 LIN9-205ENST00000481685 1916 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC6.76□□□□□ -1.33
MSX2P35548 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
MSX2P35548 AP003066.1-201ENST00000527528 1647 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSX2P35548 AC079248.1-201ENST00000427568 1546 ntBASIC6.76□□□□□ -1.33
MSX2P35548 KYNUP1-201ENST00000466683 1406 ntBASIC6.76□□□□□ -1.33
MSX2P35548 GABRR3-202ENST00000472788 1416 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
MSX2P35548 CNOT4-206ENST00000428680 4642 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
MSX2P35548 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSX2P35548 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSX2P35548 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC6.75□□□□□ -1.33
MSX2P35548 ARNTL2-203ENST00000311001 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSX2P35548 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
MSX2P35548 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
MSX2P35548 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
MSX2P35548 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
MSX2P35548 TAAR2-202ENST00000367931 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSX2P35548 TRBV7-4-201ENST00000390369 347 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
MSX2P35548 TRBV7-7-201ENST00000390377 347 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
MSX2P35548 TRAV12-1-201ENST00000390433 340 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
MSX2P35548 HMGB3P1-201ENST00000393368 573 ntBASIC6.75□□□□□ -1.33
MSX2P35548 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC6.75□□□□□ -1.33
MSX2P35548 AC093642.1-201ENST00000412193 565 ntTSL 3 BASIC6.75□□□□□ -1.33
MSX2P35548 AL355862.1-201ENST00000412705 353 ntBASIC6.75□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms