Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC7.78□□□□□ -1.16
MSX1P28360 OR7E15P-201ENST00000533484 967 ntBASIC7.78□□□□□ -1.16
MSX1P28360 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC7.78□□□□□ -1.16
MSX1P28360 AC079031.2-201ENST00000537742 615 ntBASIC7.78□□□□□ -1.16
MSX1P28360 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 AC087286.4-201ENST00000558757 746 ntTSL 3 BASIC7.78□□□□□ -1.16
MSX1P28360 AC007221.1-201ENST00000570038 796 ntTSL 5 BASIC7.78□□□□□ -1.16
MSX1P28360 AC004224.2-201ENST00000574423 529 ntTSL 5 BASIC7.78□□□□□ -1.16
MSX1P28360 AC096708.2-201ENST00000577676 512 ntBASIC7.78□□□□□ -1.16
MSX1P28360 ELOF1-207ENST00000591674 679 ntTSL 2 BASIC7.78□□□□□ -1.16
MSX1P28360 ZNF85-206ENST00000596476 1259 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 AL691432.1-202ENST00000597891 502 ntBASIC7.78□□□□□ -1.16
MSX1P28360 SUMO2P14-201ENST00000604488 293 ntBASIC7.78□□□□□ -1.16
MSX1P28360 AL365503.1-201ENST00000605247 905 ntBASIC7.78□□□□□ -1.16
MSX1P28360 AL590705.1-201ENST00000607322 484 ntTSL 4 BASIC7.78□□□□□ -1.16
MSX1P28360 AC005021.1-201ENST00000608730 355 ntBASIC7.78□□□□□ -1.16
MSX1P28360 AC012360.2-201ENST00000609349 391 ntBASIC7.78□□□□□ -1.16
MSX1P28360 MIR6807-201ENST00000621968 92 ntBASIC7.78□□□□□ -1.16
MSX1P28360 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC7.78□□□□□ -1.16
MSX1P28360 LINC01170-202ENST00000628324 650 ntTSL 2 BASIC7.78□□□□□ -1.16
MSX1P28360 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 AC005539.1-201ENST00000443768 1479 ntBASIC7.78□□□□□ -1.16
MSX1P28360 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC7.78□□□□□ -1.16
MSX1P28360 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
MSX1P28360 LINC01234-202ENST00000547963 2088 ntTSL 2 BASIC7.78□□□□□ -1.16
MSX1P28360 AC007126.1-201ENST00000508202 4781 ntBASIC7.78□□□□□ -1.16
MSX1P28360 RAD18-201ENST00000264926 5886 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 LPL-201ENST00000311322 3846 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 CD302-202ENST00000429078 3803 ntTSL 2 BASIC7.78□□□□□ -1.16
MSX1P28360 MLANA-203ENST00000381477 2415 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC7.78□□□□□ -1.16
MSX1P28360 PRCP-202ENST00000393399 2120 ntTSL 2 BASIC7.78□□□□□ -1.16
MSX1P28360 AL034397.3-202ENST00000621933 1815 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 PSG10P-201ENST00000501199 1500 ntBASIC7.78□□□□□ -1.16
MSX1P28360 F11-AS1-202ENST00000508110 1512 ntTSL 5 BASIC7.78□□□□□ -1.16
MSX1P28360 EED-206ENST00000527888 1422 ntTSL 2 BASIC7.78□□□□□ -1.16
MSX1P28360 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC7.78□□□□□ -1.16
MSX1P28360 IL5RA-202ENST00000311981 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 SKAP2-201ENST00000345317 3998 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 KYNUP2-201ENST00000582280 1329 ntBASIC7.78□□□□□ -1.16
MSX1P28360 ANKRD6-218ENST00000522441 3157 ntAPPRIS ALT1 TSL 2 BASIC7.77□□□□□ -1.16
MSX1P28360 CD46-206ENST00000360212 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.16
MSX1P28360 PTBP3-205ENST00000374257 7240 ntAPPRIS ALT1 TSL 2 BASIC7.77□□□□□ -1.17
MSX1P28360 ADAM3A-208ENST00000495171 2284 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
MSX1P28360 KIAA1024-201ENST00000305428 6732 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
MSX1P28360 XAF1-202ENST00000361842 3623 ntAPPRIS P4 TSL 1 (best) BASIC7.77□□□□□ -1.17
MSX1P28360 AC078881.1-201ENST00000507023 2161 ntTSL 2 BASIC7.77□□□□□ -1.17
MSX1P28360 ERMAP-203ENST00000372517 3423 ntAPPRIS P2 TSL 1 (best) BASIC7.77□□□□□ -1.17
MSX1P28360 SAR1A-202ENST00000373238 3227 ntAPPRIS P1 TSL 2 BASIC7.77□□□□□ -1.17
MSX1P28360 MTND5P26-201ENST00000426018 1752 ntBASIC7.77□□□□□ -1.17
MSX1P28360 AKT3-203ENST00000366539 5127 ntAPPRIS P1 TSL 5 BASIC7.77□□□□□ -1.17
MSX1P28360 TMPRSS11D-201ENST00000283916 2817 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
MSX1P28360 ADH6-203ENST00000394899 2802 ntAPPRIS ALT1 TSL 2 BASIC7.77□□□□□ -1.17
MSX1P28360 TRIM49D1-201ENST00000420869 1651 ntAPPRIS P2 TSL 5 BASIC7.77□□□□□ -1.17
MSX1P28360 TRIM49D2-202ENST00000623787 1651 ntAPPRIS P1 TSL 5 BASIC7.77□□□□□ -1.17
MSX1P28360 WFDC8-201ENST00000289953 1069 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
MSX1P28360 NOX1-203ENST00000372964 661 ntTSL 2 BASIC7.77□□□□□ -1.17
MSX1P28360 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
MSX1P28360 Y_RNA.535-201ENST00000384612 99 ntBASIC7.77□□□□□ -1.17
MSX1P28360 TAF9BP1-201ENST00000396646 746 ntBASIC7.77□□□□□ -1.17
MSX1P28360 AC009319.1-201ENST00000411493 754 ntBASIC7.77□□□□□ -1.17
MSX1P28360 MED15P8-201ENST00000411601 545 ntBASIC7.77□□□□□ -1.17
MSX1P28360 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC7.77□□□□□ -1.17
MSX1P28360 PAICSP7-201ENST00000419829 962 ntBASIC7.77□□□□□ -1.17
MSX1P28360 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC7.77□□□□□ -1.17
MSX1P28360 YWHAZP5-201ENST00000419975 730 ntBASIC7.77□□□□□ -1.17
MSX1P28360 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC7.77□□□□□ -1.17
MSX1P28360 FNDC3B-205ENST00000423424 408 ntTSL 3 BASIC7.77□□□□□ -1.17
MSX1P28360 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC7.77□□□□□ -1.17
MSX1P28360 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC7.77□□□□□ -1.17
MSX1P28360 KCTD9P3-201ENST00000434597 1169 ntBASIC7.77□□□□□ -1.17
MSX1P28360 AL513318.1-201ENST00000437925 991 ntBASIC7.77□□□□□ -1.17
MSX1P28360 EMC3-AS1-205ENST00000438698 534 ntBASIC7.77□□□□□ -1.17
MSX1P28360 AL138881.1-201ENST00000443445 789 ntTSL 3 BASIC7.77□□□□□ -1.17
MSX1P28360 MTND1P18-201ENST00000448191 573 ntBASIC7.77□□□□□ -1.17
MSX1P28360 DNAJC19P1-201ENST00000455312 319 ntBASIC7.77□□□□□ -1.17
MSX1P28360 DNAJC9-AS1-203ENST00000457758 548 ntTSL 3 BASIC7.77□□□□□ -1.17
MSX1P28360 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC7.77□□□□□ -1.17
MSX1P28360 RN7SL418P-201ENST00000473031 287 ntBASIC7.77□□□□□ -1.17
MSX1P28360 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC7.77□□□□□ -1.17
MSX1P28360 AC105918.1-201ENST00000474399 838 ntBASIC7.77□□□□□ -1.17
MSX1P28360 AC091959.2-201ENST00000477363 321 ntBASIC7.77□□□□□ -1.17
MSX1P28360 AC092989.1-201ENST00000481235 277 ntBASIC7.77□□□□□ -1.17
MSX1P28360 IGKV1-39-201ENST00000498574 398 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
MSX1P28360 IGBP1P5-201ENST00000507524 1000 ntBASIC7.77□□□□□ -1.17
MSX1P28360 AC015909.1-201ENST00000509943 839 ntTSL 3 BASIC7.77□□□□□ -1.17
MSX1P28360 AC010587.2-201ENST00000511727 448 ntBASIC7.77□□□□□ -1.17
MSX1P28360 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
MSX1P28360 RNU6-875P-201ENST00000516488 106 ntBASIC7.77□□□□□ -1.17
MSX1P28360 snoZ278.1-201ENST00000517059 112 ntBASIC7.77□□□□□ -1.17
MSX1P28360 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC7.77□□□□□ -1.17
MSX1P28360 DACT3-AS1-202ENST00000525008 496 ntTSL 2 BASIC7.77□□□□□ -1.17
MSX1P28360 AP005597.3-201ENST00000532369 799 ntBASIC7.77□□□□□ -1.17
MSX1P28360 AC078929.1-201ENST00000547679 502 ntTSL 3 BASIC7.77□□□□□ -1.17
MSX1P28360 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC7.77□□□□□ -1.17
MSX1P28360 AC009997.1-201ENST00000557862 129 ntBASIC7.77□□□□□ -1.17
MSX1P28360 AC013452.1-201ENST00000560630 598 ntBASIC7.77□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms