Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHFRQ96EP1 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHFRQ96EP1 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.31■□□□□ 0.84
CHFRQ96EP1 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.31■□□□□ 0.84
CHFRQ96EP1 MESTP1-201ENST00000404287 994 ntBASIC20.31■□□□□ 0.84
CHFRQ96EP1 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.31■□□□□ 0.84
CHFRQ96EP1 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.31■□□□□ 0.84
CHFRQ96EP1 KRT18P35-201ENST00000510488 1269 ntBASIC20.31■□□□□ 0.84
CHFRQ96EP1 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.31■□□□□ 0.84
CHFRQ96EP1 FITM1-202ENST00000559294 800 ntBASIC20.31■□□□□ 0.84
CHFRQ96EP1 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHFRQ96EP1 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHFRQ96EP1 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CHFRQ96EP1 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHFRQ96EP1 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.3■□□□□ 0.84
CHFRQ96EP1 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHFRQ96EP1 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.3■□□□□ 0.84
CHFRQ96EP1 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHFRQ96EP1 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHFRQ96EP1 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CHFRQ96EP1 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHFRQ96EP1 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.3■□□□□ 0.84
CHFRQ96EP1 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHFRQ96EP1 AC005521.1-201ENST00000393351 872 ntBASIC20.3■□□□□ 0.84
CHFRQ96EP1 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.3■□□□□ 0.84
CHFRQ96EP1 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.3■□□□□ 0.84
CHFRQ96EP1 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.3■□□□□ 0.84
CHFRQ96EP1 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.3■□□□□ 0.84
CHFRQ96EP1 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CHFRQ96EP1 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.3■□□□□ 0.84
CHFRQ96EP1 AC092865.7-201ENST00000641832 219 ntBASIC20.3■□□□□ 0.84
CHFRQ96EP1 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.3■□□□□ 0.84
CHFRQ96EP1 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHFRQ96EP1 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CHFRQ96EP1 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.3■□□□□ 0.84
CHFRQ96EP1 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHFRQ96EP1 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHFRQ96EP1 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
CHFRQ96EP1 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CHFRQ96EP1 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHFRQ96EP1 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHFRQ96EP1 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHFRQ96EP1 KRT16P1-201ENST00000399124 1418 ntBASIC20.29■□□□□ 0.84
CHFRQ96EP1 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.29■□□□□ 0.84
CHFRQ96EP1 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CHFRQ96EP1 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.29■□□□□ 0.84
CHFRQ96EP1 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHFRQ96EP1 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.29■□□□□ 0.84
CHFRQ96EP1 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CHFRQ96EP1 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.29■□□□□ 0.84
CHFRQ96EP1 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.29■□□□□ 0.84
CHFRQ96EP1 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHFRQ96EP1 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHFRQ96EP1 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHFRQ96EP1 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHFRQ96EP1 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.29■□□□□ 0.84
CHFRQ96EP1 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CHFRQ96EP1 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHFRQ96EP1 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHFRQ96EP1 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHFRQ96EP1 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHFRQ96EP1 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
CHFRQ96EP1 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHFRQ96EP1 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHFRQ96EP1 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHFRQ96EP1 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHFRQ96EP1 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHFRQ96EP1 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHFRQ96EP1 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHFRQ96EP1 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.28■□□□□ 0.84
CHFRQ96EP1 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.28■□□□□ 0.84
CHFRQ96EP1 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.28■□□□□ 0.84
CHFRQ96EP1 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.28■□□□□ 0.84
CHFRQ96EP1 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.28■□□□□ 0.84
CHFRQ96EP1 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.28■□□□□ 0.84
CHFRQ96EP1 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHFRQ96EP1 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHFRQ96EP1 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CHFRQ96EP1 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHFRQ96EP1 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
CHFRQ96EP1 AC073508.3-201ENST00000619697 1419 ntBASIC20.27■□□□□ 0.84
CHFRQ96EP1 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHFRQ96EP1 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.27■□□□□ 0.84
CHFRQ96EP1 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHFRQ96EP1 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHFRQ96EP1 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.27■□□□□ 0.84
CHFRQ96EP1 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHFRQ96EP1 DPP3P2-201ENST00000416030 1696 ntBASIC20.27■□□□□ 0.84
CHFRQ96EP1 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHFRQ96EP1 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHFRQ96EP1 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHFRQ96EP1 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHFRQ96EP1 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHFRQ96EP1 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.27■□□□□ 0.84
CHFRQ96EP1 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.27■□□□□ 0.84
CHFRQ96EP1 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.27■□□□□ 0.84
CHFRQ96EP1 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.27■□□□□ 0.84
CHFRQ96EP1 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.27■□□□□ 0.84
CHFRQ96EP1 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.27■□□□□ 0.84
CHFRQ96EP1 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms