Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MIR3960-201ENST00000583311 91 ntBASIC12.48□□□□□ -0.41
LINC00643Q86TS7 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00643Q86TS7 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 MED25-210ENST00000612854 801 ntTSL 5 BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 MED25-214ENST00000622402 642 ntTSL 5 BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 AC009086.3-201ENST00000623486 1008 ntBASIC12.46□□□□□ -0.41
LINC00643Q86TS7 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00643Q86TS7 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
LINC00643Q86TS7 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
LINC00643Q86TS7 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
LINC00643Q86TS7 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
LINC00643Q86TS7 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC12.46□□□□□ -0.42
LINC00643Q86TS7 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC12.46□□□□□ -0.42
LINC00643Q86TS7 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
LINC00643Q86TS7 TREX1-205ENST00000625293 1783 ntBASIC12.46□□□□□ -0.42
LINC00643Q86TS7 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
LINC00643Q86TS7 AC067852.2-201ENST00000590513 2313 ntBASIC12.45□□□□□ -0.42
LINC00643Q86TS7 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC12.45□□□□□ -0.42
LINC00643Q86TS7 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 LINC01126-201ENST00000623515 1646 ntBASIC12.45□□□□□ -0.42
LINC00643Q86TS7 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms