Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS1Q01581 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.16■□□□□ 0.66
HMGCS1Q01581 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.16■□□□□ 0.66
HMGCS1Q01581 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
HMGCS1Q01581 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS1Q01581 KRT17P1-201ENST00000399211 1546 ntBASIC19.15■□□□□ 0.66
HMGCS1Q01581 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS1Q01581 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS1Q01581 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.15■□□□□ 0.66
HMGCS1Q01581 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS1Q01581 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS1Q01581 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS1Q01581 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGCS1Q01581 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGCS1Q01581 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HMGCS1Q01581 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
HMGCS1Q01581 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS1Q01581 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS1Q01581 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HMGCS1Q01581 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS1Q01581 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.66
HMGCS1Q01581 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
HMGCS1Q01581 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.14■□□□□ 0.66
HMGCS1Q01581 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.14■□□□□ 0.66
HMGCS1Q01581 TREX1-205ENST00000625293 1783 ntBASIC19.14■□□□□ 0.66
HMGCS1Q01581 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.14■□□□□ 0.65
HMGCS1Q01581 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS1Q01581 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
HMGCS1Q01581 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.14■□□□□ 0.65
HMGCS1Q01581 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS1Q01581 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS1Q01581 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
HMGCS1Q01581 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.14■□□□□ 0.65
HMGCS1Q01581 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.14■□□□□ 0.65
HMGCS1Q01581 AL589743.5-201ENST00000616611 1050 ntBASIC19.14■□□□□ 0.65
HMGCS1Q01581 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS1Q01581 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS1Q01581 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS1Q01581 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.14■□□□□ 0.65
HMGCS1Q01581 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS1Q01581 KRT8P20-201ENST00000423953 1409 ntBASIC19.14■□□□□ 0.65
HMGCS1Q01581 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS1Q01581 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS1Q01581 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.13■□□□□ 0.65
HMGCS1Q01581 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.13■□□□□ 0.65
HMGCS1Q01581 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.13■□□□□ 0.65
HMGCS1Q01581 AC080038.1-201ENST00000611274 1154 ntBASIC19.13■□□□□ 0.65
HMGCS1Q01581 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS1Q01581 KRT16P6-202ENST00000425692 1426 ntBASIC19.13■□□□□ 0.65
HMGCS1Q01581 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.13■□□□□ 0.65
HMGCS1Q01581 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS1Q01581 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.13■□□□□ 0.65
HMGCS1Q01581 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
HMGCS1Q01581 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.13■□□□□ 0.65
HMGCS1Q01581 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS1Q01581 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS1Q01581 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS1Q01581 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS1Q01581 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS1Q01581 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.12■□□□□ 0.65
HMGCS1Q01581 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS1Q01581 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.12■□□□□ 0.65
HMGCS1Q01581 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS1Q01581 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS1Q01581 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS1Q01581 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS1Q01581 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS1Q01581 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.12■□□□□ 0.65
HMGCS1Q01581 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS1Q01581 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.12■□□□□ 0.65
HMGCS1Q01581 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.12■□□□□ 0.65
HMGCS1Q01581 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS1Q01581 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
HMGCS1Q01581 AC087289.5-201ENST00000586076 3175 ntBASIC19.12■□□□□ 0.65
HMGCS1Q01581 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.12■□□□□ 0.65
HMGCS1Q01581 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS1Q01581 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS1Q01581 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.12■□□□□ 0.65
HMGCS1Q01581 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS1Q01581 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS1Q01581 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGCS1Q01581 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS1Q01581 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGCS1Q01581 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HMGCS1Q01581 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGCS1Q01581 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
HMGCS1Q01581 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HMGCS1Q01581 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGCS1Q01581 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGCS1Q01581 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HMGCS1Q01581 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.11■□□□□ 0.65
HMGCS1Q01581 C2orf69P4-201ENST00000565394 541 ntBASIC19.11■□□□□ 0.65
HMGCS1Q01581 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.11■□□□□ 0.65
HMGCS1Q01581 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.11■□□□□ 0.65
HMGCS1Q01581 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.11■□□□□ 0.65
HMGCS1Q01581 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.11■□□□□ 0.65
HMGCS1Q01581 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGCS1Q01581 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGCS1Q01581 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGCS1Q01581 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms