Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
LIM2P55344 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
LIM2P55344 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.89■□□□□ 0.61
LIM2P55344 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIM2P55344 RNA5SP413-201ENST00000516373 109 ntBASIC18.89■□□□□ 0.61
LIM2P55344 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
LIM2P55344 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.89■□□□□ 0.61
LIM2P55344 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.89■□□□□ 0.61
LIM2P55344 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIM2P55344 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIM2P55344 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIM2P55344 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIM2P55344 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIM2P55344 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.89■□□□□ 0.61
LIM2P55344 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.89■□□□□ 0.61
LIM2P55344 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIM2P55344 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIM2P55344 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.88■□□□□ 0.61
LIM2P55344 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIM2P55344 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIM2P55344 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIM2P55344 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIM2P55344 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.88■□□□□ 0.61
LIM2P55344 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.88■□□□□ 0.61
LIM2P55344 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIM2P55344 AC006557.6-201ENST00000623071 864 ntBASIC18.88■□□□□ 0.61
LIM2P55344 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIM2P55344 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIM2P55344 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIM2P55344 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIM2P55344 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.88■□□□□ 0.61
LIM2P55344 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIM2P55344 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.88■□□□□ 0.61
LIM2P55344 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIM2P55344 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIM2P55344 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
LIM2P55344 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIM2P55344 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIM2P55344 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIM2P55344 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIM2P55344 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIM2P55344 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIM2P55344 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIM2P55344 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.87■□□□□ 0.61
LIM2P55344 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.87■□□□□ 0.61
LIM2P55344 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIM2P55344 KRT16P6-202ENST00000425692 1426 ntBASIC18.87■□□□□ 0.61
LIM2P55344 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.87■□□□□ 0.61
LIM2P55344 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.87■□□□□ 0.61
LIM2P55344 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
LIM2P55344 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
LIM2P55344 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.87■□□□□ 0.61
LIM2P55344 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.87■□□□□ 0.61
LIM2P55344 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.87■□□□□ 0.61
LIM2P55344 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIM2P55344 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.87■□□□□ 0.61
LIM2P55344 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
LIM2P55344 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
LIM2P55344 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.86■□□□□ 0.61
LIM2P55344 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIM2P55344 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIM2P55344 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.86■□□□□ 0.61
LIM2P55344 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIM2P55344 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIM2P55344 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
LIM2P55344 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.86■□□□□ 0.61
LIM2P55344 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.86■□□□□ 0.61
LIM2P55344 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.86■□□□□ 0.61
LIM2P55344 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.86■□□□□ 0.61
LIM2P55344 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.86■□□□□ 0.61
LIM2P55344 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
LIM2P55344 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIM2P55344 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIM2P55344 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIM2P55344 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.86■□□□□ 0.61
LIM2P55344 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIM2P55344 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIM2P55344 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIM2P55344 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIM2P55344 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
LIM2P55344 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.85■□□□□ 0.61
LIM2P55344 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIM2P55344 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.85■□□□□ 0.61
LIM2P55344 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
LIM2P55344 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIM2P55344 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIM2P55344 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIM2P55344 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIM2P55344 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
LIM2P55344 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIM2P55344 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIM2P55344 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIM2P55344 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIM2P55344 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIM2P55344 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.85■□□□□ 0.61
LIM2P55344 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIM2P55344 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIM2P55344 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.85■□□□□ 0.61
LIM2P55344 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
LIM2P55344 UNC93B5-201ENST00000530315 699 ntBASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms