Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NEK3P51956 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
NEK3P51956 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
NEK3P51956 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NEK3P51956 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.49■□□□□ 0.87
NEK3P51956 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.48■□□□□ 0.87
NEK3P51956 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NEK3P51956 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
NEK3P51956 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
NEK3P51956 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NEK3P51956 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.48■□□□□ 0.87
NEK3P51956 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.48■□□□□ 0.87
NEK3P51956 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NEK3P51956 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
NEK3P51956 KRT18P29-201ENST00000397031 1267 ntBASIC20.48■□□□□ 0.87
NEK3P51956 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
NEK3P51956 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.48■□□□□ 0.87
NEK3P51956 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NEK3P51956 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
NEK3P51956 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
NEK3P51956 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
NEK3P51956 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.48■□□□□ 0.87
NEK3P51956 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NEK3P51956 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.47■□□□□ 0.87
NEK3P51956 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NEK3P51956 AC092368.3-202ENST00000574180 1591 ntBASIC20.47■□□□□ 0.87
NEK3P51956 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NEK3P51956 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
NEK3P51956 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NEK3P51956 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
NEK3P51956 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NEK3P51956 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
NEK3P51956 AP003097.1-201ENST00000530657 1135 ntBASIC20.47■□□□□ 0.87
NEK3P51956 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.47■□□□□ 0.87
NEK3P51956 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.47■□□□□ 0.87
NEK3P51956 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NEK3P51956 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.47■□□□□ 0.87
NEK3P51956 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NEK3P51956 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NEK3P51956 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NEK3P51956 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
NEK3P51956 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NEK3P51956 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.46■□□□□ 0.87
NEK3P51956 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NEK3P51956 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
NEK3P51956 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NEK3P51956 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NEK3P51956 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.46■□□□□ 0.87
NEK3P51956 AC026366.1-201ENST00000488803 879 ntBASIC20.46■□□□□ 0.87
NEK3P51956 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NEK3P51956 PNMA6B-201ENST00000538162 1200 ntBASIC20.46■□□□□ 0.87
NEK3P51956 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NEK3P51956 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NEK3P51956 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
NEK3P51956 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NEK3P51956 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.46■□□□□ 0.87
NEK3P51956 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NEK3P51956 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NEK3P51956 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
NEK3P51956 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
NEK3P51956 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.45■□□□□ 0.86
NEK3P51956 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.45■□□□□ 0.86
NEK3P51956 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
NEK3P51956 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEK3P51956 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NEK3P51956 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NEK3P51956 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.44■□□□□ 0.86
NEK3P51956 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NEK3P51956 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NEK3P51956 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NEK3P51956 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
NEK3P51956 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.44■□□□□ 0.86
NEK3P51956 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.44■□□□□ 0.86
NEK3P51956 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NEK3P51956 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.44■□□□□ 0.86
NEK3P51956 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NEK3P51956 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NEK3P51956 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
NEK3P51956 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NEK3P51956 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
NEK3P51956 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
NEK3P51956 AC092720.2-201ENST00000602388 1665 ntBASIC20.44■□□□□ 0.86
NEK3P51956 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
NEK3P51956 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms