Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.27■□□□□ 0.68
HNF4AP41235 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HNF4AP41235 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HNF4AP41235 TMEM179-206ENST00000616017 1645 ntBASIC19.27■□□□□ 0.68
HNF4AP41235 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HNF4AP41235 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.27■□□□□ 0.68
HNF4AP41235 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
HNF4AP41235 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.27■□□□□ 0.68
HNF4AP41235 AC023632.3-201ENST00000521633 145 ntBASIC19.27■□□□□ 0.68
HNF4AP41235 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.27■□□□□ 0.68
HNF4AP41235 MIR4758-201ENST00000577688 71 ntBASIC19.27■□□□□ 0.68
HNF4AP41235 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.27■□□□□ 0.68
HNF4AP41235 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HNF4AP41235 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HNF4AP41235 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
HNF4AP41235 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
HNF4AP41235 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.26■□□□□ 0.67
HNF4AP41235 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.26■□□□□ 0.67
HNF4AP41235 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
HNF4AP41235 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.26■□□□□ 0.67
HNF4AP41235 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.26■□□□□ 0.67
HNF4AP41235 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.26■□□□□ 0.67
HNF4AP41235 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.26■□□□□ 0.67
HNF4AP41235 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 AC092118.2-201ENST00000613495 667 ntBASIC19.26■□□□□ 0.67
HNF4AP41235 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.26■□□□□ 0.67
HNF4AP41235 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
HNF4AP41235 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HNF4AP41235 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.25■□□□□ 0.67
HNF4AP41235 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HNF4AP41235 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.25■□□□□ 0.67
HNF4AP41235 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HNF4AP41235 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
HNF4AP41235 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HNF4AP41235 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HNF4AP41235 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.25■□□□□ 0.67
HNF4AP41235 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
HNF4AP41235 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HNF4AP41235 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
HNF4AP41235 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
HNF4AP41235 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HNF4AP41235 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HNF4AP41235 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.25■□□□□ 0.67
HNF4AP41235 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
HNF4AP41235 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HNF4AP41235 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
HNF4AP41235 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
HNF4AP41235 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.25■□□□□ 0.67
HNF4AP41235 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HNF4AP41235 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HNF4AP41235 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HNF4AP41235 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HNF4AP41235 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.24■□□□□ 0.67
HNF4AP41235 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
HNF4AP41235 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HNF4AP41235 AFG3L1P-217ENST00000557444 2447 ntBASIC19.24■□□□□ 0.67
HNF4AP41235 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HNF4AP41235 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HNF4AP41235 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
HNF4AP41235 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HNF4AP41235 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
HNF4AP41235 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.24■□□□□ 0.67
HNF4AP41235 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
HNF4AP41235 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HNF4AP41235 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HNF4AP41235 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HNF4AP41235 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HNF4AP41235 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.24■□□□□ 0.67
HNF4AP41235 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HNF4AP41235 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HNF4AP41235 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HNF4AP41235 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HNF4AP41235 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
HNF4AP41235 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HNF4AP41235 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
HNF4AP41235 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.23■□□□□ 0.67
HNF4AP41235 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HNF4AP41235 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.23■□□□□ 0.67
HNF4AP41235 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.23■□□□□ 0.67
HNF4AP41235 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
HNF4AP41235 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HNF4AP41235 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms