Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RPA3P35244 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
RPA3P35244 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.8
RPA3P35244 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.08■□□□□ 0.8
RPA3P35244 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
RPA3P35244 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RPA3P35244 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RPA3P35244 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
RPA3P35244 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
RPA3P35244 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
RPA3P35244 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPA3P35244 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.07■□□□□ 0.8
RPA3P35244 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPA3P35244 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
RPA3P35244 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
RPA3P35244 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
RPA3P35244 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.07■□□□□ 0.8
RPA3P35244 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.07■□□□□ 0.8
RPA3P35244 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.07■□□□□ 0.8
RPA3P35244 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
RPA3P35244 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.07■□□□□ 0.8
RPA3P35244 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.07■□□□□ 0.8
RPA3P35244 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.07■□□□□ 0.8
RPA3P35244 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
RPA3P35244 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPA3P35244 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPA3P35244 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPA3P35244 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RPA3P35244 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.07■□□□□ 0.8
RPA3P35244 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPA3P35244 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.07■□□□□ 0.8
RPA3P35244 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPA3P35244 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPA3P35244 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RPA3P35244 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.06■□□□□ 0.8
RPA3P35244 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.06■□□□□ 0.8
RPA3P35244 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPA3P35244 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
RPA3P35244 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPA3P35244 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPA3P35244 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPA3P35244 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPA3P35244 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPA3P35244 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.06■□□□□ 0.8
RPA3P35244 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPA3P35244 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.06■□□□□ 0.8
RPA3P35244 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.06■□□□□ 0.8
RPA3P35244 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.06■□□□□ 0.8
RPA3P35244 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.06■□□□□ 0.8
RPA3P35244 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.06■□□□□ 0.8
RPA3P35244 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.06■□□□□ 0.8
RPA3P35244 AC013268.1-206ENST00000638368 961 ntBASIC20.06■□□□□ 0.8
RPA3P35244 AC112229.1-201ENST00000639295 961 ntBASIC20.06■□□□□ 0.8
RPA3P35244 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.06■□□□□ 0.8
RPA3P35244 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.06■□□□□ 0.8
RPA3P35244 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
RPA3P35244 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPA3P35244 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.06■□□□□ 0.8
RPA3P35244 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPA3P35244 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RPA3P35244 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.06■□□□□ 0.8
RPA3P35244 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPA3P35244 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPA3P35244 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPA3P35244 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPA3P35244 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPA3P35244 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPA3P35244 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RPA3P35244 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPA3P35244 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPA3P35244 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPA3P35244 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPA3P35244 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPA3P35244 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RPA3P35244 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.05■□□□□ 0.8
RPA3P35244 AC080038.1-201ENST00000611274 1154 ntBASIC20.05■□□□□ 0.8
RPA3P35244 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.05■□□□□ 0.8
RPA3P35244 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPA3P35244 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPA3P35244 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RPA3P35244 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
RPA3P35244 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPA3P35244 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPA3P35244 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
RPA3P35244 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
RPA3P35244 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPA3P35244 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPA3P35244 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.04■□□□□ 0.8
RPA3P35244 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RPA3P35244 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.04■□□□□ 0.8
RPA3P35244 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPA3P35244 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.04■□□□□ 0.8
RPA3P35244 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.04■□□□□ 0.8
RPA3P35244 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RPA3P35244 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.04■□□□□ 0.8
RPA3P35244 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.04■□□□□ 0.8
RPA3P35244 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.04■□□□□ 0.8
RPA3P35244 DUX4L16-201ENST00000555130 1264 ntBASIC20.04■□□□□ 0.8
RPA3P35244 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.04■□□□□ 0.8
RPA3P35244 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms