Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHMT2P34897 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SHMT2P34897 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.47■□□□□ 0.71
SHMT2P34897 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.47■□□□□ 0.71
SHMT2P34897 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHMT2P34897 DPP3P2-201ENST00000416030 1696 ntBASIC19.47■□□□□ 0.71
SHMT2P34897 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SHMT2P34897 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.47■□□□□ 0.71
SHMT2P34897 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
SHMT2P34897 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHMT2P34897 HLA-G-202ENST00000376815 851 ntBASIC19.47■□□□□ 0.71
SHMT2P34897 HLA-G-203ENST00000376818 1127 ntBASIC19.47■□□□□ 0.71
SHMT2P34897 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.47■□□□□ 0.71
SHMT2P34897 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHMT2P34897 POU5F1P3-201ENST00000428824 1078 ntBASIC19.47■□□□□ 0.71
SHMT2P34897 TSPY20P-201ENST00000450910 630 ntBASIC19.47■□□□□ 0.71
SHMT2P34897 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
SHMT2P34897 AC026366.1-201ENST00000488803 879 ntBASIC19.47■□□□□ 0.71
SHMT2P34897 UNC93B4-201ENST00000505679 747 ntBASIC19.47■□□□□ 0.71
SHMT2P34897 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHMT2P34897 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHMT2P34897 SOX15-203ENST00000570788 1093 ntBASIC19.47■□□□□ 0.71
SHMT2P34897 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SHMT2P34897 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SHMT2P34897 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SHMT2P34897 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
SHMT2P34897 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.47■□□□□ 0.71
SHMT2P34897 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHMT2P34897 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.47■□□□□ 0.71
SHMT2P34897 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SHMT2P34897 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.47■□□□□ 0.71
SHMT2P34897 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SHMT2P34897 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.47■□□□□ 0.71
SHMT2P34897 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SHMT2P34897 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
SHMT2P34897 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHMT2P34897 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHMT2P34897 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
SHMT2P34897 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.46■□□□□ 0.71
SHMT2P34897 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.46■□□□□ 0.71
SHMT2P34897 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHMT2P34897 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHMT2P34897 ESRRAP1-201ENST00000400596 1257 ntBASIC19.46■□□□□ 0.71
SHMT2P34897 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
SHMT2P34897 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.46■□□□□ 0.71
SHMT2P34897 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.46■□□□□ 0.71
SHMT2P34897 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.46■□□□□ 0.71
SHMT2P34897 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SHMT2P34897 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SHMT2P34897 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.46■□□□□ 0.71
SHMT2P34897 PTBP1P-201ENST00000554374 1601 ntBASIC19.46■□□□□ 0.71
SHMT2P34897 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHMT2P34897 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.46■□□□□ 0.71
SHMT2P34897 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SHMT2P34897 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SHMT2P34897 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.45■□□□□ 0.7
SHMT2P34897 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SHMT2P34897 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SHMT2P34897 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHMT2P34897 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SHMT2P34897 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SHMT2P34897 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.45■□□□□ 0.7
SHMT2P34897 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SHMT2P34897 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.45■□□□□ 0.7
SHMT2P34897 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.45■□□□□ 0.7
SHMT2P34897 AL031963.3-201ENST00000606441 850 ntBASIC19.45■□□□□ 0.7
SHMT2P34897 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.45■□□□□ 0.7
SHMT2P34897 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHMT2P34897 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHMT2P34897 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHMT2P34897 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SHMT2P34897 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHMT2P34897 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SHMT2P34897 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHMT2P34897 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHMT2P34897 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SHMT2P34897 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHMT2P34897 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SHMT2P34897 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SHMT2P34897 KRT8P20-201ENST00000423953 1409 ntBASIC19.44■□□□□ 0.7
SHMT2P34897 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHMT2P34897 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SHMT2P34897 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.44■□□□□ 0.7
SHMT2P34897 ABHD17AP1-201ENST00000358206 933 ntBASIC19.44■□□□□ 0.7
SHMT2P34897 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
SHMT2P34897 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.44■□□□□ 0.7
SHMT2P34897 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.44■□□□□ 0.7
SHMT2P34897 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.44■□□□□ 0.7
SHMT2P34897 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.44■□□□□ 0.7
SHMT2P34897 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHMT2P34897 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHMT2P34897 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHMT2P34897 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SHMT2P34897 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SHMT2P34897 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SHMT2P34897 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHMT2P34897 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.44■□□□□ 0.7
SHMT2P34897 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
SHMT2P34897 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHMT2P34897 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms