Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC22.46■■□□□ 1.19
CIITAP33076 USP39-204ENST00000409766 2033 ntTSL 2 BASIC22.46■■□□□ 1.19
CIITAP33076 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
CIITAP33076 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CIITAP33076 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
CIITAP33076 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CIITAP33076 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC22.46■■□□□ 1.19
CIITAP33076 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC22.45■■□□□ 1.19
CIITAP33076 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.19
CIITAP33076 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CIITAP33076 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC22.45■■□□□ 1.18
CIITAP33076 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC22.45■■□□□ 1.18
CIITAP33076 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC22.45■■□□□ 1.18
CIITAP33076 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC22.45■■□□□ 1.18
CIITAP33076 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC22.45■■□□□ 1.18
CIITAP33076 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC22.45■■□□□ 1.18
CIITAP33076 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
CIITAP33076 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CIITAP33076 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CIITAP33076 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CIITAP33076 MOK-225ENST00000522867 1883 ntTSL 5 BASIC22.45■■□□□ 1.18
CIITAP33076 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC22.45■■□□□ 1.18
CIITAP33076 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC22.45■■□□□ 1.18
CIITAP33076 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC22.45■■□□□ 1.18
CIITAP33076 AL691432.2-201ENST00000607222 2038 ntBASIC22.45■■□□□ 1.18
CIITAP33076 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
CIITAP33076 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CIITAP33076 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
CIITAP33076 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CIITAP33076 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC22.44■■□□□ 1.18
CIITAP33076 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
CIITAP33076 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC22.44■■□□□ 1.18
CIITAP33076 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC22.44■■□□□ 1.18
CIITAP33076 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC22.44■■□□□ 1.18
CIITAP33076 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CIITAP33076 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CIITAP33076 AC239809.2-201ENST00000415381 517 ntBASIC22.44■■□□□ 1.18
CIITAP33076 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CIITAP33076 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CIITAP33076 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC22.44■■□□□ 1.18
CIITAP33076 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC22.44■■□□□ 1.18
CIITAP33076 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC22.44■■□□□ 1.18
CIITAP33076 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC22.44■■□□□ 1.18
CIITAP33076 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC22.44■■□□□ 1.18
CIITAP33076 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC22.44■■□□□ 1.18
CIITAP33076 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC22.44■■□□□ 1.18
CIITAP33076 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC22.44■■□□□ 1.18
CIITAP33076 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
CIITAP33076 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CIITAP33076 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC22.44■■□□□ 1.18
CIITAP33076 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CIITAP33076 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CIITAP33076 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CIITAP33076 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC22.43■■□□□ 1.18
CIITAP33076 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CIITAP33076 AL391422.3-201ENST00000603791 2761 ntBASIC22.43■■□□□ 1.18
CIITAP33076 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CIITAP33076 KRASP1-201ENST00000407852 552 ntBASIC22.43■■□□□ 1.18
CIITAP33076 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC22.43■■□□□ 1.18
CIITAP33076 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
CIITAP33076 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CIITAP33076 AL158047.1-201ENST00000445918 881 ntBASIC22.43■■□□□ 1.18
CIITAP33076 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CIITAP33076 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC22.43■■□□□ 1.18
CIITAP33076 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC22.43■■□□□ 1.18
CIITAP33076 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CIITAP33076 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CIITAP33076 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
CIITAP33076 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC22.43■■□□□ 1.18
CIITAP33076 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CIITAP33076 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CIITAP33076 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CIITAP33076 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CIITAP33076 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CIITAP33076 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC22.43■■□□□ 1.18
CIITAP33076 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CIITAP33076 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CIITAP33076 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC22.42■■□□□ 1.18
CIITAP33076 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CIITAP33076 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CIITAP33076 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC22.42■■□□□ 1.18
CIITAP33076 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC22.42■■□□□ 1.18
CIITAP33076 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CIITAP33076 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
CIITAP33076 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC22.42■■□□□ 1.18
CIITAP33076 F2R-202ENST00000505600 442 ntTSL 2 BASIC22.42■■□□□ 1.18
CIITAP33076 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC22.42■■□□□ 1.18
CIITAP33076 AC110285.5-201ENST00000611501 352 ntBASIC22.42■■□□□ 1.18
CIITAP33076 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC22.42■■□□□ 1.18
CIITAP33076 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
CIITAP33076 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CIITAP33076 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC22.42■■□□□ 1.18
CIITAP33076 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
CIITAP33076 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CIITAP33076 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CIITAP33076 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CIITAP33076 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC22.41■■□□□ 1.18
CIITAP33076 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CIITAP33076 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CIITAP33076 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms