Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.19■□□□□ 0.82
COL4A2P08572 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.19■□□□□ 0.82
COL4A2P08572 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.19■□□□□ 0.82
COL4A2P08572 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.19■□□□□ 0.82
COL4A2P08572 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.19■□□□□ 0.82
COL4A2P08572 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A2P08572 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A2P08572 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.19■□□□□ 0.82
COL4A2P08572 TFP1-202ENST00000475455 1573 ntBASIC20.19■□□□□ 0.82
COL4A2P08572 RCC2P6-201ENST00000526625 1557 ntBASIC20.19■□□□□ 0.82
COL4A2P08572 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A2P08572 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.19■□□□□ 0.82
COL4A2P08572 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A2P08572 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A2P08572 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A2P08572 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.19■□□□□ 0.82
COL4A2P08572 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
COL4A2P08572 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A2P08572 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.19■□□□□ 0.82
COL4A2P08572 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.19■□□□□ 0.82
COL4A2P08572 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.18■□□□□ 0.82
COL4A2P08572 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A2P08572 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A2P08572 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A2P08572 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.18■□□□□ 0.82
COL4A2P08572 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A2P08572 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.18■□□□□ 0.82
COL4A2P08572 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A2P08572 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A2P08572 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.18■□□□□ 0.82
COL4A2P08572 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.18■□□□□ 0.82
COL4A2P08572 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.18■□□□□ 0.82
COL4A2P08572 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.18■□□□□ 0.82
COL4A2P08572 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.18■□□□□ 0.82
COL4A2P08572 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A2P08572 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A2P08572 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A2P08572 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A2P08572 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
COL4A2P08572 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.17■□□□□ 0.82
COL4A2P08572 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.17■□□□□ 0.82
COL4A2P08572 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A2P08572 AC063952.2-201ENST00000498792 1227 ntBASIC20.17■□□□□ 0.82
COL4A2P08572 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.17■□□□□ 0.82
COL4A2P08572 FAM87A-204ENST00000613235 858 ntBASIC20.17■□□□□ 0.82
COL4A2P08572 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A2P08572 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A2P08572 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A2P08572 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A2P08572 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A2P08572 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.17■□□□□ 0.82
COL4A2P08572 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.17■□□□□ 0.82
COL4A2P08572 AC079834.2-201ENST00000609776 1949 ntBASIC20.17■□□□□ 0.82
COL4A2P08572 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A2P08572 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A2P08572 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.17■□□□□ 0.82
COL4A2P08572 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.16■□□□□ 0.82
COL4A2P08572 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A2P08572 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A2P08572 AC018553.1-201ENST00000616682 1458 ntBASIC20.16■□□□□ 0.82
COL4A2P08572 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A2P08572 AC096733.2-201ENST00000609937 1394 ntBASIC20.16■□□□□ 0.82
COL4A2P08572 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A2P08572 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A2P08572 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.16■□□□□ 0.82
COL4A2P08572 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
COL4A2P08572 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
COL4A2P08572 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.16■□□□□ 0.82
COL4A2P08572 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A2P08572 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
COL4A2P08572 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A2P08572 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A2P08572 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A2P08572 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.16■□□□□ 0.82
COL4A2P08572 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.16■□□□□ 0.82
COL4A2P08572 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.16■□□□□ 0.82
COL4A2P08572 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.16■□□□□ 0.82
COL4A2P08572 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
COL4A2P08572 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.16■□□□□ 0.82
COL4A2P08572 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
COL4A2P08572 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A2P08572 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A2P08572 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.16■□□□□ 0.82
COL4A2P08572 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A2P08572 AC097488.1-201ENST00000507834 756 ntBASIC20.16■□□□□ 0.82
COL4A2P08572 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
COL4A2P08572 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A2P08572 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A2P08572 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A2P08572 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A2P08572 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A2P08572 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A2P08572 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A2P08572 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A2P08572 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A2P08572 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A2P08572 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.15■□□□□ 0.82
COL4A2P08572 AC117947.1-201ENST00000427448 529 ntBASIC20.15■□□□□ 0.82
COL4A2P08572 AC128688.1-201ENST00000487626 519 ntBASIC20.15■□□□□ 0.82
COL4A2P08572 EGLN1P1-201ENST00000531623 762 ntBASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms