Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
COL1A1P02452 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC24.08■■□□□ 1.45
COL1A1P02452 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.45
COL1A1P02452 AL137060.1-201ENST00000618151 2648 ntBASIC24.08■■□□□ 1.45
COL1A1P02452 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
COL1A1P02452 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
COL1A1P02452 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC24.08■■□□□ 1.45
COL1A1P02452 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC24.08■■□□□ 1.45
COL1A1P02452 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
COL1A1P02452 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC24.08■■□□□ 1.45
COL1A1P02452 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC24.08■■□□□ 1.45
COL1A1P02452 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.45
COL1A1P02452 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC24.08■■□□□ 1.45
COL1A1P02452 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
COL1A1P02452 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC24.08■■□□□ 1.45
COL1A1P02452 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC24.08■■□□□ 1.44
COL1A1P02452 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
COL1A1P02452 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
COL1A1P02452 MMP23A-201ENST00000234610 1017 ntBASIC24.07■■□□□ 1.44
COL1A1P02452 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC24.07■■□□□ 1.44
COL1A1P02452 SRI-203ENST00000419179 1307 ntTSL 2 BASIC24.07■■□□□ 1.44
COL1A1P02452 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC24.07■■□□□ 1.44
COL1A1P02452 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
COL1A1P02452 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
COL1A1P02452 FAM197Y1-201ENST00000421178 764 ntBASIC24.07■■□□□ 1.44
COL1A1P02452 AL355355.2-201ENST00000442321 338 ntBASIC24.07■■□□□ 1.44
COL1A1P02452 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
COL1A1P02452 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC24.07■■□□□ 1.44
COL1A1P02452 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC24.07■■□□□ 1.44
COL1A1P02452 DECR2-212ENST00000627716 352 ntTSL 2 BASIC24.07■■□□□ 1.44
COL1A1P02452 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL1A1P02452 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC24.06■■□□□ 1.44
COL1A1P02452 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL1A1P02452 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL1A1P02452 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL1A1P02452 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
COL1A1P02452 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC24.06■■□□□ 1.44
COL1A1P02452 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC24.06■■□□□ 1.44
COL1A1P02452 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
COL1A1P02452 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC24.06■■□□□ 1.44
COL1A1P02452 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC24.06■■□□□ 1.44
COL1A1P02452 AC145285.6-201ENST00000604632 637 ntBASIC24.06■■□□□ 1.44
COL1A1P02452 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
COL1A1P02452 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
COL1A1P02452 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
COL1A1P02452 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
COL1A1P02452 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
COL1A1P02452 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC24.05■■□□□ 1.44
COL1A1P02452 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
COL1A1P02452 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC24.05■■□□□ 1.44
COL1A1P02452 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC24.05■■□□□ 1.44
COL1A1P02452 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC24.05■■□□□ 1.44
COL1A1P02452 C1QL1P1-201ENST00000568105 661 ntBASIC24.05■■□□□ 1.44
COL1A1P02452 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC24.05■■□□□ 1.44
COL1A1P02452 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC24.05■■□□□ 1.44
COL1A1P02452 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
COL1A1P02452 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
COL1A1P02452 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
COL1A1P02452 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC24.05■■□□□ 1.44
COL1A1P02452 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC24.05■■□□□ 1.44
COL1A1P02452 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
COL1A1P02452 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
COL1A1P02452 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
COL1A1P02452 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
COL1A1P02452 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
COL1A1P02452 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
COL1A1P02452 NUDT16P1-203ENST00000513809 620 ntBASIC24.04■■□□□ 1.44
COL1A1P02452 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC24.04■■□□□ 1.44
COL1A1P02452 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC24.04■■□□□ 1.44
COL1A1P02452 AC073314.1-201ENST00000568729 2216 ntBASIC24.04■■□□□ 1.44
COL1A1P02452 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC24.04■■□□□ 1.44
COL1A1P02452 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC24.04■■□□□ 1.44
COL1A1P02452 AC018553.1-201ENST00000616682 1458 ntBASIC24.04■■□□□ 1.44
COL1A1P02452 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
COL1A1P02452 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC24.04■■□□□ 1.44
COL1A1P02452 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL1A1P02452 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL1A1P02452 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL1A1P02452 AC092865.7-201ENST00000641832 219 ntBASIC24.03■■□□□ 1.44
COL1A1P02452 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
COL1A1P02452 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL1A1P02452 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL1A1P02452 TFP1-202ENST00000475455 1573 ntBASIC24.03■■□□□ 1.44
COL1A1P02452 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC24.03■■□□□ 1.44
COL1A1P02452 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL1A1P02452 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
COL1A1P02452 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL1A1P02452 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
COL1A1P02452 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
COL1A1P02452 BX119927.1-201ENST00000636596 1552 ntBASIC24.02■■□□□ 1.44
COL1A1P02452 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC24.02■■□□□ 1.44
COL1A1P02452 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC24.02■■□□□ 1.44
COL1A1P02452 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
COL1A1P02452 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
COL1A1P02452 NIFKP9-201ENST00000419265 221 ntBASIC24.02■■□□□ 1.44
COL1A1P02452 KRT18P35-201ENST00000510488 1269 ntBASIC24.02■■□□□ 1.44
COL1A1P02452 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC24.02■■□□□ 1.44
COL1A1P02452 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
COL1A1P02452 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC24.02■■□□□ 1.44
COL1A1P02452 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms