Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC073912.3-201ENST00000624414 853 ntBASIC19.48■□□□□ 0.71
TNFP01375 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.48■□□□□ 0.71
TNFP01375 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
TNFP01375 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TNFP01375 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TNFP01375 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TNFP01375 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TNFP01375 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.47■□□□□ 0.71
TNFP01375 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TNFP01375 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TNFP01375 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TNFP01375 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.47■□□□□ 0.71
TNFP01375 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.47■□□□□ 0.71
TNFP01375 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TNFP01375 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TNFP01375 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TNFP01375 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
TNFP01375 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TNFP01375 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
TNFP01375 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
TNFP01375 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.46■□□□□ 0.71
TNFP01375 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.46■□□□□ 0.71
TNFP01375 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.46■□□□□ 0.71
TNFP01375 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.46■□□□□ 0.71
TNFP01375 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TNFP01375 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
TNFP01375 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
TNFP01375 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
TNFP01375 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.46■□□□□ 0.71
TNFP01375 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.46■□□□□ 0.71
TNFP01375 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.46■□□□□ 0.71
TNFP01375 REXO1L12P-201ENST00000622156 912 ntBASIC19.46■□□□□ 0.71
TNFP01375 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
TNFP01375 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TNFP01375 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TNFP01375 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
TNFP01375 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TNFP01375 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TNFP01375 AP006587.1-201ENST00000534129 1502 ntBASIC19.46■□□□□ 0.71
TNFP01375 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TNFP01375 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TNFP01375 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
TNFP01375 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
TNFP01375 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.45■□□□□ 0.7
TNFP01375 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
TNFP01375 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
TNFP01375 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
TNFP01375 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
TNFP01375 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.45■□□□□ 0.7
TNFP01375 AP002982.1-201ENST00000492365 877 ntBASIC19.45■□□□□ 0.7
TNFP01375 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.45■□□□□ 0.7
TNFP01375 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.45■□□□□ 0.7
TNFP01375 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.45■□□□□ 0.7
TNFP01375 AC073195.1-201ENST00000607241 877 ntBASIC19.45■□□□□ 0.7
TNFP01375 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.45■□□□□ 0.7
TNFP01375 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFP01375 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
TNFP01375 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
TNFP01375 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFP01375 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFP01375 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
TNFP01375 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFP01375 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TNFP01375 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFP01375 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TNFP01375 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFP01375 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFP01375 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFP01375 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFP01375 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFP01375 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
TNFP01375 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.44■□□□□ 0.7
TNFP01375 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.44■□□□□ 0.7
TNFP01375 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.44■□□□□ 0.7
TNFP01375 AL355355.2-201ENST00000442321 338 ntBASIC19.44■□□□□ 0.7
TNFP01375 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
TNFP01375 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TNFP01375 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.44■□□□□ 0.7
TNFP01375 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
TNFP01375 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.44■□□□□ 0.7
TNFP01375 CD177P1-201ENST00000606252 935 ntBASIC19.44■□□□□ 0.7
TNFP01375 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.44■□□□□ 0.7
TNFP01375 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.44■□□□□ 0.7
TNFP01375 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.44■□□□□ 0.7
TNFP01375 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFP01375 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFP01375 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFP01375 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
TNFP01375 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TNFP01375 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFP01375 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.44■□□□□ 0.7
TNFP01375 AC116351.2-201ENST00000606540 1585 ntBASIC19.44■□□□□ 0.7
TNFP01375 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFP01375 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TNFP01375 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TNFP01375 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.43■□□□□ 0.7
TNFP01375 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.43■□□□□ 0.7
TNFP01375 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.43■□□□□ 0.7
TNFP01375 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TNFP01375 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms