Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SEMA3DO95025 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SEMA3DO95025 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SEMA3DO95025 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SEMA3DO95025 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SEMA3DO95025 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
SEMA3DO95025 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.03■□□□□ 0.64
SEMA3DO95025 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SEMA3DO95025 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
SEMA3DO95025 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SEMA3DO95025 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SEMA3DO95025 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.03■□□□□ 0.64
SEMA3DO95025 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.03■□□□□ 0.64
SEMA3DO95025 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SEMA3DO95025 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SEMA3DO95025 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SEMA3DO95025 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SEMA3DO95025 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SEMA3DO95025 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SEMA3DO95025 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.03■□□□□ 0.64
SEMA3DO95025 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
SEMA3DO95025 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SEMA3DO95025 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SEMA3DO95025 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SEMA3DO95025 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SEMA3DO95025 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
SEMA3DO95025 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SEMA3DO95025 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
SEMA3DO95025 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SEMA3DO95025 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SEMA3DO95025 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SEMA3DO95025 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.02■□□□□ 0.64
SEMA3DO95025 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.02■□□□□ 0.64
SEMA3DO95025 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.02■□□□□ 0.64
SEMA3DO95025 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SEMA3DO95025 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
SEMA3DO95025 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.02■□□□□ 0.64
SEMA3DO95025 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SEMA3DO95025 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SEMA3DO95025 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SEMA3DO95025 AC138932.1-201ENST00000534164 6830 ntBASIC19.01■□□□□ 0.63
SEMA3DO95025 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SEMA3DO95025 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SEMA3DO95025 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.01■□□□□ 0.63
SEMA3DO95025 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SEMA3DO95025 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SEMA3DO95025 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SEMA3DO95025 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SEMA3DO95025 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.01■□□□□ 0.63
SEMA3DO95025 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SEMA3DO95025 DUSP5P2-201ENST00000426873 1033 ntBASIC19.01■□□□□ 0.63
SEMA3DO95025 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.01■□□□□ 0.63
SEMA3DO95025 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.01■□□□□ 0.63
SEMA3DO95025 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.01■□□□□ 0.63
SEMA3DO95025 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.01■□□□□ 0.63
SEMA3DO95025 MIR4758-201ENST00000577688 71 ntBASIC19.01■□□□□ 0.63
SEMA3DO95025 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.01■□□□□ 0.63
SEMA3DO95025 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SEMA3DO95025 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SEMA3DO95025 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.01■□□□□ 0.63
SEMA3DO95025 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19■□□□□ 0.63
SEMA3DO95025 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
SEMA3DO95025 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19■□□□□ 0.63
SEMA3DO95025 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SEMA3DO95025 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19■□□□□ 0.63
SEMA3DO95025 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SEMA3DO95025 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19■□□□□ 0.63
SEMA3DO95025 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SEMA3DO95025 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SEMA3DO95025 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19■□□□□ 0.63
SEMA3DO95025 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19■□□□□ 0.63
SEMA3DO95025 AC073210.2-201ENST00000430369 194 ntBASIC19■□□□□ 0.63
SEMA3DO95025 AC091874.3-201ENST00000512672 1195 ntBASIC19■□□□□ 0.63
SEMA3DO95025 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19■□□□□ 0.63
SEMA3DO95025 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19■□□□□ 0.63
SEMA3DO95025 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19■□□□□ 0.63
SEMA3DO95025 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19■□□□□ 0.63
SEMA3DO95025 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19■□□□□ 0.63
SEMA3DO95025 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SEMA3DO95025 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19■□□□□ 0.63
SEMA3DO95025 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19■□□□□ 0.63
SEMA3DO95025 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19■□□□□ 0.63
SEMA3DO95025 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SEMA3DO95025 LBX2-AS1-202ENST00000603175 2083 ntBASIC19■□□□□ 0.63
SEMA3DO95025 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SEMA3DO95025 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19■□□□□ 0.63
SEMA3DO95025 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19■□□□□ 0.63
SEMA3DO95025 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19■□□□□ 0.63
SEMA3DO95025 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19■□□□□ 0.63
SEMA3DO95025 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SEMA3DO95025 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19■□□□□ 0.63
SEMA3DO95025 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SEMA3DO95025 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
SEMA3DO95025 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.99■□□□□ 0.63
SEMA3DO95025 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
SEMA3DO95025 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.99■□□□□ 0.63
SEMA3DO95025 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
SEMA3DO95025 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SEMA3DO95025 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SEMA3DO95025 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms