Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC31.19■■■□□ 2.58
PCF11O94913 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
PCF11O94913 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC31.19■■■□□ 2.58
PCF11O94913 MESTP1-201ENST00000404287 994 ntBASIC31.19■■■□□ 2.58
PCF11O94913 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC31.19■■■□□ 2.58
PCF11O94913 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC31.19■■■□□ 2.58
PCF11O94913 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC31.19■■■□□ 2.58
PCF11O94913 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
PCF11O94913 PHGDH-210ENST00000641115 1638 ntBASIC31.19■■■□□ 2.58
PCF11O94913 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
PCF11O94913 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC31.18■■■□□ 2.58
PCF11O94913 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
PCF11O94913 AC116562.2-201ENST00000507042 360 ntBASIC31.18■■■□□ 2.58
PCF11O94913 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
PCF11O94913 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC31.18■■■□□ 2.58
PCF11O94913 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
PCF11O94913 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
PCF11O94913 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC31.18■■■□□ 2.58
PCF11O94913 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
PCF11O94913 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
PCF11O94913 TFP1-202ENST00000475455 1573 ntBASIC31.18■■■□□ 2.58
PCF11O94913 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
PCF11O94913 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC31.17■■■□□ 2.58
PCF11O94913 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
PCF11O94913 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC31.17■■■□□ 2.58
PCF11O94913 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
PCF11O94913 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
PCF11O94913 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
PCF11O94913 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
PCF11O94913 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
PCF11O94913 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC31.17■■■□□ 2.58
PCF11O94913 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC31.17■■■□□ 2.58
PCF11O94913 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
PCF11O94913 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
PCF11O94913 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
PCF11O94913 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC31.17■■■□□ 2.58
PCF11O94913 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
PCF11O94913 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
PCF11O94913 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC31.17■■■□□ 2.58
PCF11O94913 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC31.17■■■□□ 2.58
PCF11O94913 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
PCF11O94913 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
PCF11O94913 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
PCF11O94913 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC31.17■■■□□ 2.58
PCF11O94913 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
PCF11O94913 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC31.16■■■□□ 2.58
PCF11O94913 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC31.16■■■□□ 2.58
PCF11O94913 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
PCF11O94913 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC31.16■■■□□ 2.58
PCF11O94913 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC31.16■■■□□ 2.58
PCF11O94913 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC31.16■■■□□ 2.58
PCF11O94913 KRT18P16-201ENST00000510337 1294 ntBASIC31.16■■■□□ 2.58
PCF11O94913 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC31.16■■■□□ 2.58
PCF11O94913 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
PCF11O94913 BX119927.1-201ENST00000636596 1552 ntBASIC31.15■■■□□ 2.58
PCF11O94913 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC31.15■■■□□ 2.58
PCF11O94913 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC31.15■■■□□ 2.58
PCF11O94913 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC31.15■■■□□ 2.58
PCF11O94913 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC31.15■■■□□ 2.58
PCF11O94913 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
PCF11O94913 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC31.15■■■□□ 2.58
PCF11O94913 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC31.15■■■□□ 2.58
PCF11O94913 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC31.15■■■□□ 2.58
PCF11O94913 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC31.15■■■□□ 2.58
PCF11O94913 AC092865.7-201ENST00000641832 219 ntBASIC31.15■■■□□ 2.58
PCF11O94913 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
PCF11O94913 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC31.15■■■□□ 2.58
PCF11O94913 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC31.15■■■□□ 2.58
PCF11O94913 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC31.15■■■□□ 2.58
PCF11O94913 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
PCF11O94913 UNC93B2-201ENST00000285383 730 ntBASIC31.14■■■□□ 2.58
PCF11O94913 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
PCF11O94913 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC31.14■■■□□ 2.58
PCF11O94913 AP006587.1-201ENST00000534129 1502 ntBASIC31.14■■■□□ 2.58
PCF11O94913 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
PCF11O94913 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC31.13■■■□□ 2.57
PCF11O94913 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC31.13■■■□□ 2.57
PCF11O94913 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC31.13■■■□□ 2.57
PCF11O94913 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC31.13■■■□□ 2.57
PCF11O94913 AC145285.6-201ENST00000604632 637 ntBASIC31.13■■■□□ 2.57
PCF11O94913 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
PCF11O94913 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC31.13■■■□□ 2.57
PCF11O94913 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
PCF11O94913 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC31.13■■■□□ 2.57
PCF11O94913 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC31.13■■■□□ 2.57
PCF11O94913 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
PCF11O94913 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC31.13■■■□□ 2.57
PCF11O94913 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
PCF11O94913 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
PCF11O94913 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC31.13■■■□□ 2.57
PCF11O94913 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC31.13■■■□□ 2.57
PCF11O94913 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC31.12■■■□□ 2.57
PCF11O94913 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC31.12■■■□□ 2.57
PCF11O94913 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
PCF11O94913 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
PCF11O94913 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
PCF11O94913 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC31.12■■■□□ 2.57
PCF11O94913 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC31.12■■■□□ 2.57
PCF11O94913 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC31.11■■■□□ 2.57
PCF11O94913 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms