Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX4O60224 AC093503.3-201ENST00000624917 2352 ntBASIC17.97■□□□□ 0.47
SSX4O60224 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX4O60224 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SSX4O60224 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX4O60224 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX4O60224 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.97■□□□□ 0.47
SSX4O60224 BID-203ENST00000399765 1879 ntTSL 2 BASIC17.97■□□□□ 0.47
SSX4O60224 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC17.97■□□□□ 0.47
SSX4O60224 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX4O60224 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX4O60224 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSX4O60224 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC17.96■□□□□ 0.47
SSX4O60224 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX4O60224 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.96■□□□□ 0.47
SSX4O60224 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX4O60224 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
SSX4O60224 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC17.96■□□□□ 0.47
SSX4O60224 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.96■□□□□ 0.47
SSX4O60224 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX4O60224 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
SSX4O60224 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC17.96■□□□□ 0.47
SSX4O60224 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC17.96■□□□□ 0.47
SSX4O60224 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
SSX4O60224 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSX4O60224 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
SSX4O60224 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX4O60224 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
SSX4O60224 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSX4O60224 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC17.96■□□□□ 0.47
SSX4O60224 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX4O60224 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
SSX4O60224 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX4O60224 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX4O60224 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX4O60224 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX4O60224 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX4O60224 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX4O60224 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
SSX4O60224 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.95■□□□□ 0.46
SSX4O60224 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX4O60224 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
SSX4O60224 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX4O60224 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.95■□□□□ 0.46
SSX4O60224 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.95■□□□□ 0.46
SSX4O60224 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC17.95■□□□□ 0.46
SSX4O60224 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
SSX4O60224 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SSX4O60224 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.95■□□□□ 0.46
SSX4O60224 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SSX4O60224 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SSX4O60224 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SSX4O60224 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX4O60224 LTB4R2-202ENST00000528054 3092 ntBASIC17.95■□□□□ 0.46
SSX4O60224 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX4O60224 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX4O60224 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SSX4O60224 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.95■□□□□ 0.46
SSX4O60224 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SSX4O60224 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 AP006587.3-201ENST00000525742 1516 ntBASIC17.94■□□□□ 0.46
SSX4O60224 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 NAA20-201ENST00000310450 920 ntTSL 2 BASIC17.94■□□□□ 0.46
SSX4O60224 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC17.94■□□□□ 0.46
SSX4O60224 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.94■□□□□ 0.46
SSX4O60224 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
SSX4O60224 TERF1P5-201ENST00000477545 1207 ntBASIC17.94■□□□□ 0.46
SSX4O60224 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
SSX4O60224 AC133552.2-202ENST00000575694 574 ntBASIC17.94■□□□□ 0.46
SSX4O60224 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.94■□□□□ 0.46
SSX4O60224 AC013268.1-206ENST00000638368 961 ntBASIC17.94■□□□□ 0.46
SSX4O60224 AC112229.1-201ENST00000639295 961 ntBASIC17.94■□□□□ 0.46
SSX4O60224 AC133041.1-202ENST00000642053 222 ntBASIC17.94■□□□□ 0.46
SSX4O60224 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC17.94■□□□□ 0.46
SSX4O60224 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SSX4O60224 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SSX4O60224 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.94■□□□□ 0.46
SSX4O60224 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.94■□□□□ 0.46
SSX4O60224 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.94■□□□□ 0.46
SSX4O60224 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SSX4O60224 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.94■□□□□ 0.46
SSX4O60224 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSX4O60224 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms