Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
NPHP1O15259 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
NPHP1O15259 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC25.08■■□□□ 1.6
NPHP1O15259 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC25.08■■□□□ 1.6
NPHP1O15259 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
NPHP1O15259 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.6
NPHP1O15259 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
NPHP1O15259 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
NPHP1O15259 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC25.07■■□□□ 1.6
NPHP1O15259 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
NPHP1O15259 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
NPHP1O15259 ECEL1P1-201ENST00000373592 1742 ntBASIC25.07■■□□□ 1.6
NPHP1O15259 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
NPHP1O15259 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC25.07■■□□□ 1.6
NPHP1O15259 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC25.07■■□□□ 1.6
NPHP1O15259 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
NPHP1O15259 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
NPHP1O15259 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
NPHP1O15259 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC25.07■■□□□ 1.6
NPHP1O15259 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
NPHP1O15259 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC25.07■■□□□ 1.6
NPHP1O15259 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
NPHP1O15259 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC25.06■■□□□ 1.6
NPHP1O15259 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC25.06■■□□□ 1.6
NPHP1O15259 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC25.06■■□□□ 1.6
NPHP1O15259 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC25.06■■□□□ 1.6
NPHP1O15259 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC25.06■■□□□ 1.6
NPHP1O15259 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC25.06■■□□□ 1.6
NPHP1O15259 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC25.06■■□□□ 1.6
NPHP1O15259 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
NPHP1O15259 AC121338.2-201ENST00000622535 1744 ntBASIC25.06■■□□□ 1.6
NPHP1O15259 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
NPHP1O15259 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
NPHP1O15259 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
NPHP1O15259 KRT8P20-201ENST00000423953 1409 ntBASIC25.05■■□□□ 1.6
NPHP1O15259 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
NPHP1O15259 NIFKP9-201ENST00000419265 221 ntBASIC25.05■■□□□ 1.6
NPHP1O15259 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC25.05■■□□□ 1.6
NPHP1O15259 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
NPHP1O15259 DUT-205ENST00000558813 769 ntTSL 2 BASIC25.05■■□□□ 1.6
NPHP1O15259 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC25.05■■□□□ 1.6
NPHP1O15259 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
NPHP1O15259 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC25.05■■□□□ 1.6
NPHP1O15259 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC25.05■■□□□ 1.6
NPHP1O15259 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
NPHP1O15259 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC25.05■■□□□ 1.6
NPHP1O15259 EP400NL-214ENST00000641289 2402 ntBASIC25.05■■□□□ 1.6
NPHP1O15259 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC25.05■■□□□ 1.6
NPHP1O15259 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
NPHP1O15259 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC25.04■■□□□ 1.6
NPHP1O15259 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC25.04■■□□□ 1.6
NPHP1O15259 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
NPHP1O15259 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NPHP1O15259 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
NPHP1O15259 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
NPHP1O15259 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC25.04■■□□□ 1.6
NPHP1O15259 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NPHP1O15259 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
NPHP1O15259 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC25.04■■□□□ 1.6
NPHP1O15259 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC25.04■■□□□ 1.6
NPHP1O15259 RNF146-204ENST00000476956 884 ntTSL 2 BASIC25.04■■□□□ 1.6
NPHP1O15259 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC25.04■■□□□ 1.6
NPHP1O15259 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
NPHP1O15259 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC25.04■■□□□ 1.6
NPHP1O15259 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
NPHP1O15259 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NPHP1O15259 Z98882.1-201ENST00000622160 2253 ntBASIC25.03■■□□□ 1.6
NPHP1O15259 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP1O15259 CYP2D8P-201ENST00000433633 1490 ntBASIC25.03■■□□□ 1.6
NPHP1O15259 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
NPHP1O15259 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC25.03■■□□□ 1.6
NPHP1O15259 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
NPHP1O15259 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP1O15259 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC25.03■■□□□ 1.6
NPHP1O15259 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP1O15259 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC25.03■■□□□ 1.6
NPHP1O15259 TMA16-209ENST00000513272 803 ntTSL 2 BASIC25.03■■□□□ 1.6
NPHP1O15259 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC25.03■■□□□ 1.6
NPHP1O15259 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC25.03■■□□□ 1.6
NPHP1O15259 FITM1-202ENST00000559294 800 ntBASIC25.03■■□□□ 1.6
NPHP1O15259 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP1O15259 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
NPHP1O15259 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC25.02■■□□□ 1.6
NPHP1O15259 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC25.02■■□□□ 1.6
NPHP1O15259 AL117328.2-201ENST00000624617 1940 ntBASIC25.02■■□□□ 1.6
NPHP1O15259 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
NPHP1O15259 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
NPHP1O15259 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
NPHP1O15259 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
NPHP1O15259 CALM3-202ENST00000391918 702 ntTSL 2 BASIC25.02■■□□□ 1.6
NPHP1O15259 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC25.02■■□□□ 1.6
NPHP1O15259 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC25.02■■□□□ 1.6
NPHP1O15259 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC25.02■■□□□ 1.6
NPHP1O15259 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
NPHP1O15259 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
NPHP1O15259 LINC00565-201ENST00000562710 2331 ntBASIC25.02■■□□□ 1.6
NPHP1O15259 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
NPHP1O15259 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
NPHP1O15259 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
NPHP1O15259 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms