Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.11■□□□□ 0.81
AP3B1O00203 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
AP3B1O00203 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
AP3B1O00203 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
AP3B1O00203 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
AP3B1O00203 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.11■□□□□ 0.81
AP3B1O00203 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
AP3B1O00203 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
AP3B1O00203 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
AP3B1O00203 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
AP3B1O00203 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
AP3B1O00203 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
AP3B1O00203 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
AP3B1O00203 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
AP3B1O00203 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.1■□□□□ 0.81
AP3B1O00203 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
AP3B1O00203 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.1■□□□□ 0.81
AP3B1O00203 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
AP3B1O00203 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
AP3B1O00203 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.1■□□□□ 0.81
AP3B1O00203 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
AP3B1O00203 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
AP3B1O00203 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.1■□□□□ 0.81
AP3B1O00203 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.1■□□□□ 0.81
AP3B1O00203 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.1■□□□□ 0.81
AP3B1O00203 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.1■□□□□ 0.81
AP3B1O00203 AF201337.1-201ENST00000520239 748 ntBASIC20.1■□□□□ 0.81
AP3B1O00203 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.1■□□□□ 0.81
AP3B1O00203 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.1■□□□□ 0.81
AP3B1O00203 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.1■□□□□ 0.81
AP3B1O00203 KRT17P1-201ENST00000399211 1546 ntBASIC20.1■□□□□ 0.81
AP3B1O00203 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
AP3B1O00203 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
AP3B1O00203 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
AP3B1O00203 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
AP3B1O00203 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
AP3B1O00203 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.09■□□□□ 0.81
AP3B1O00203 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
AP3B1O00203 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
AP3B1O00203 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
AP3B1O00203 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.09■□□□□ 0.81
AP3B1O00203 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.09■□□□□ 0.81
AP3B1O00203 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
AP3B1O00203 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
AP3B1O00203 MKRN4P-201ENST00000444706 1521 ntBASIC20.09■□□□□ 0.81
AP3B1O00203 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
AP3B1O00203 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
AP3B1O00203 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
AP3B1O00203 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.09■□□□□ 0.81
AP3B1O00203 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
AP3B1O00203 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.09■□□□□ 0.81
AP3B1O00203 AC026185.1-201ENST00000445748 174 ntBASIC20.09■□□□□ 0.81
AP3B1O00203 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.09■□□□□ 0.81
AP3B1O00203 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.09■□□□□ 0.81
AP3B1O00203 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.09■□□□□ 0.81
AP3B1O00203 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
AP3B1O00203 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
AP3B1O00203 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.09■□□□□ 0.81
AP3B1O00203 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
AP3B1O00203 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.09■□□□□ 0.81
AP3B1O00203 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
AP3B1O00203 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
AP3B1O00203 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
AP3B1O00203 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.08■□□□□ 0.81
AP3B1O00203 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
AP3B1O00203 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.08■□□□□ 0.81
AP3B1O00203 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.08■□□□□ 0.81
AP3B1O00203 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
AP3B1O00203 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
AP3B1O00203 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
AP3B1O00203 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
AP3B1O00203 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.08■□□□□ 0.81
AP3B1O00203 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.81
AP3B1O00203 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.08■□□□□ 0.81
AP3B1O00203 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.08■□□□□ 0.81
AP3B1O00203 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.08■□□□□ 0.81
AP3B1O00203 AC092437.1-201ENST00000624794 1048 ntBASIC20.08■□□□□ 0.81
AP3B1O00203 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.08■□□□□ 0.8
AP3B1O00203 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.08■□□□□ 0.8
AP3B1O00203 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
AP3B1O00203 PHGDH-210ENST00000641115 1638 ntBASIC20.08■□□□□ 0.8
AP3B1O00203 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
AP3B1O00203 AC125437.2-201ENST00000625180 2167 ntBASIC20.08■□□□□ 0.8
AP3B1O00203 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.08■□□□□ 0.8
AP3B1O00203 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
AP3B1O00203 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
AP3B1O00203 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
AP3B1O00203 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
AP3B1O00203 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
AP3B1O00203 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
AP3B1O00203 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
AP3B1O00203 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.07■□□□□ 0.8
AP3B1O00203 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.07■□□□□ 0.8
AP3B1O00203 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.07■□□□□ 0.8
AP3B1O00203 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.07■□□□□ 0.8
AP3B1O00203 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.07■□□□□ 0.8
AP3B1O00203 AC105036.2-201ENST00000569468 176 ntBASIC20.07■□□□□ 0.8
AP3B1O00203 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.07■□□□□ 0.8
AP3B1O00203 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.07■□□□□ 0.8
AP3B1O00203 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms