Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 AC145285.6-201ENST00000604632 637 ntBASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 AP000525.1-201ENST00000608286 694 ntBASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 AC079598.2-202ENST00000546624 1451 ntBASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
TRAV17A0A0B4J275 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 AC116351.2-201ENST00000606540 1585 ntBASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 MIR1238-201ENST00000408483 83 ntBASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 AL031985.4-201ENST00000642138 673 ntBASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV17A0A0B4J275 AF106564.1-201ENST00000607058 2553 ntBASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 AC092720.2-201ENST00000602388 1665 ntBASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 AC007225.1-201ENST00000566331 1836 ntBASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 YBX1P10-201ENST00000444752 975 ntBASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 C1QL1P1-201ENST00000568105 661 ntBASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 MIR6786-201ENST00000616843 113 ntBASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV17A0A0B4J275 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV17A0A0B4J275 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.02■□□□□ 0.48
TRAV17A0A0B4J275 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV17A0A0B4J275 TMPOP1-202ENST00000424642 1267 ntBASIC18.02■□□□□ 0.48
TRAV17A0A0B4J275 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.02■□□□□ 0.48
TRAV17A0A0B4J275 NAPSB-206ENST00000562112 1266 ntBASIC18.02■□□□□ 0.48
TRAV17A0A0B4J275 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
TRAV17A0A0B4J275 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.02■□□□□ 0.48
TRAV17A0A0B4J275 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
TRAV17A0A0B4J275 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV17A0A0B4J275 AC005363.2-201ENST00000618631 242 ntBASIC18.02■□□□□ 0.48
TRAV17A0A0B4J275 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV17A0A0B4J275 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV17A0A0B4J275 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.02■□□□□ 0.47
TRAV17A0A0B4J275 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV17A0A0B4J275 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.02■□□□□ 0.47
TRAV17A0A0B4J275 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.47
TRAV17A0A0B4J275 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
TRAV17A0A0B4J275 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.02■□□□□ 0.47
TRAV17A0A0B4J275 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV17A0A0B4J275 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TRAV17A0A0B4J275 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.01■□□□□ 0.47
TRAV17A0A0B4J275 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms