Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 ELOVL5-201ENST00000304434 2827 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 TAS2R7-201ENST00000240687 1096 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 AC023886.2-201ENST00000321285 411 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 RNA5SP442-201ENST00000365050 107 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 RNA5SP355-201ENST00000365317 135 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 AC074375.1-201ENST00000372993 192 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 SERPINB12-202ENST00000382768 1278 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 RNU6-167P-201ENST00000384292 106 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 AC090114.1-201ENST00000393266 448 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 RN7SKP117-201ENST00000410175 264 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 LINC01505-201ENST00000411451 686 ntTSL 3 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 SMARCA2-211ENST00000417599 980 ntTSL 5 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 FDPSP6-201ENST00000425091 512 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 AC108463.2-201ENST00000451230 412 ntTSL 5 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 MIR4422HG-201ENST00000451250 638 ntTSL 3 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 AC005517.1-201ENST00000452091 489 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 AL450263.1-202ENST00000453199 643 ntTSL 3 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 AC092675.1-203ENST00000454230 538 ntTSL 5 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 NDUFB4P1-201ENST00000462398 381 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 AL928654.1-201ENST00000476081 354 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 ANK3-213ENST00000486349 493 ntTSL 2 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 AC110760.2-202ENST00000507517 946 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 AC096754.1-201ENST00000508904 818 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 SCARNA6-201ENST00000515982 265 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 C14orf159-213ENST00000519019 834 ntTSL 3 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 AC022639.1-204ENST00000520365 569 ntTSL 4 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 C8orf44-205ENST00000521889 598 ntAPPRIS ALT2 TSL 3 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 AC010247.1-201ENST00000527895 759 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 NF1P12-201ENST00000549593 583 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 AC090971.3-201ENST00000557871 1041 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 FRG2IP-201ENST00000563581 781 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 SCIMP-204ENST00000574297 569 ntAPPRIS ALT2 TSL 3 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 AC090241.1-201ENST00000587732 621 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 AL035410.2-201ENST00000604963 864 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 JAML-213ENST00000640745 951 ntTSL 5 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 AC034229.2-201ENST00000566945 2508 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 MTHFD1P1-201ENST00000413059 2764 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
NKX3-1Q99801 AC096992.2-201ENST00000609553 1684 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 LINC01232-204ENST00000626729 2796 ntTSL 2 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
NKX3-1Q99801 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
NKX3-1Q99801 CCAT2-201ENST00000630920 1752 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 CHCHD3P1-201ENST00000425516 676 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 LINC00575-201ENST00000426551 910 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
NKX3-1Q99801 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 HGF-206ENST00000444829 1184 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
NKX3-1Q99801 LAPTM4BP1-201ENST00000447781 690 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 MTND4LP12-201ENST00000448237 295 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 SNORA35.1-201ENST00000458908 128 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 AC023818.1-201ENST00000498379 384 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 AC016559.1-201ENST00000511420 199 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 AC011352.2-201ENST00000514574 1016 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 AC037450.1-201ENST00000518129 647 ntTSL 3 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 TRAV11-201ENST00000539512 339 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 NXPE2P1-201ENST00000543705 726 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 AC005833.3-202ENST00000544741 770 ntAPPRIS P1 TSL 3 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 AL161757.4-202ENST00000557467 737 ntTSL 3 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 AC004494.1-202ENST00000573820 480 ntTSL 4 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 AP005901.4-201ENST00000577336 569 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 SIGLEC31P-201ENST00000594237 551 ntBASIC5.91□□□□□ -1.46
NKX3-1Q99801 SIGLECL1-205ENST00000597824 870 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
NKX3-1Q99801 MAGEB5-201ENST00000602297 1216 ntAPPRIS P1 TSL 3 BASIC5.91□□□□□ -1.46
NKX3-1Q99801 AL513218.1-201ENST00000606527 391 ntBASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms