Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 AC010894.1-201ENST00000313760 361 ntBASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 ODF3-202ENST00000342593 386 ntTSL 5 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 RNU1-5P-201ENST00000362684 144 ntBASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 PKIB-203ENST00000368446 556 ntTSL 2 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 MLXIP-203ENST00000377037 805 ntTSL 5 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 RNA5SP122-201ENST00000384457 108 ntBASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 AL590762.1-201ENST00000391782 432 ntBASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 CDC42P6-201ENST00000421246 576 ntBASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 AC079807.1-201ENST00000429993 481 ntBASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 AC018638.3-201ENST00000461273 132 ntBASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 RN7SL654P-201ENST00000479178 292 ntBASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 MAST4-IT1-201ENST00000514241 658 ntBASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 NXPE2P1-201ENST00000543705 726 ntBASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 RN7SL230P-201ENST00000580835 303 ntBASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 AC007255.2-201ENST00000604053 631 ntBASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 TRIM5-202ENST00000380034 2991 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 UGT2B25P-201ENST00000511504 1586 ntBASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 AL355488.1-201ENST00000449169 2611 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 RPL5P5-201ENST00000392009 893 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 VN1R3-201ENST00000418822 919 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 RPL5P34-201ENST00000426545 891 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 RPSAP32-201ENST00000432681 526 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 RPL5P9-201ENST00000448118 886 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 AC093166.3-201ENST00000448785 303 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 NMNAT1P3-201ENST00000457517 888 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 RN7SL216P-201ENST00000471607 298 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 RNA5SP278-201ENST00000517055 102 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 AC011853.1-201ENST00000518911 454 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 TOMM20P1-201ENST00000534518 427 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 AC009729.1-201ENST00000548873 1133 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 PPP4R1-AS1-201ENST00000582435 379 ntTSL 2 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 AL499605.1-201ENST00000604628 403 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 AL139041.1-201ENST00000605480 610 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 MIR6071-201ENST00000616741 78 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 MIR8089-201ENST00000620165 82 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 Six3os1_1.1-201ENST00000620900 87 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 RPSAP68-201ENST00000625020 438 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 AC116631.1-202ENST00000640984 683 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 PPWD1-214ENST00000535264 2195 ntTSL 2 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 YES1-203ENST00000577961 4554 ntTSL 5 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 NPHP1-201ENST00000316534 3756 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms