Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 DMD-222ENST00000474231 5209 ntTSL 5 BASIC5.71□□□□□ -1.49
CDX1P47902 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CDX1P47902 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC5.71□□□□□ -1.5
CDX1P47902 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CDX1P47902 IFNA16-201ENST00000380216 939 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
CDX1P47902 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CDX1P47902 LINC01505-201ENST00000411451 686 ntTSL 3 BASIC5.71□□□□□ -1.5
CDX1P47902 AC235097.1-201ENST00000412163 681 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CDX1P47902 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CDX1P47902 AL049651.2-202ENST00000419734 412 ntTSL 5 BASIC5.71□□□□□ -1.5
CDX1P47902 OR7E117P-201ENST00000422682 1112 ntBASIC5.71□□□□□ -1.5
CDX1P47902 CYP4F34P-201ENST00000425951 481 ntBASIC5.71□□□□□ -1.5
CDX1P47902 AC073900.1-201ENST00000429766 776 ntBASIC5.71□□□□□ -1.5
CDX1P47902 AL162231.2-201ENST00000434627 665 ntTSL 2 BASIC5.71□□□□□ -1.5
CDX1P47902 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC5.71□□□□□ -1.5
CDX1P47902 RN7SL251P-201ENST00000464175 297 ntBASIC5.71□□□□□ -1.5
CDX1P47902 AC084878.1-201ENST00000480555 648 ntBASIC5.71□□□□□ -1.5
CDX1P47902 AC109587.1-201ENST00000482368 962 ntTSL 3 BASIC5.71□□□□□ -1.5
CDX1P47902 ANK3-213ENST00000486349 493 ntTSL 2 BASIC5.71□□□□□ -1.5
CDX1P47902 RNU6-751P-201ENST00000516382 101 ntBASIC5.71□□□□□ -1.5
CDX1P47902 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
CDX1P47902 AP001257.1-201ENST00000533106 385 ntTSL 3 BASIC5.71□□□□□ -1.5
CDX1P47902 ASB8-207ENST00000536953 923 ntTSL 2 BASIC5.71□□□□□ -1.5
CDX1P47902 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC5.71□□□□□ -1.5
CDX1P47902 HNRNPA1P71-201ENST00000559135 950 ntBASIC5.71□□□□□ -1.5
CDX1P47902 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC5.71□□□□□ -1.5
CDX1P47902 AC092368.2-201ENST00000565911 600 ntBASIC5.71□□□□□ -1.5
CDX1P47902 AC104581.3-201ENST00000573621 348 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
CDX1P47902 AC015818.6-201ENST00000584274 634 ntBASIC5.71□□□□□ -1.5
CDX1P47902 ZNF431-203ENST00000594425 610 ntTSL 2 BASIC5.71□□□□□ -1.5
CDX1P47902 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.71□□□□□ -1.5
CDX1P47902 AL121985.2-201ENST00000621192 555 ntBASIC5.71□□□□□ -1.5
CDX1P47902 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.71□□□□□ -1.5
CDX1P47902 LINC01002-204ENST00000631644 473 ntTSL 5 BASIC5.71□□□□□ -1.5
CDX1P47902 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC5.71□□□□□ -1.5
CDX1P47902 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC5.71□□□□□ -1.5
CDX1P47902 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CDX1P47902 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CDX1P47902 AC069222.1-201ENST00000608028 3360 ntBASIC5.71□□□□□ -1.5
CDX1P47902 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.71□□□□□ -1.5
CDX1P47902 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CDX1P47902 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC5.71□□□□□ -1.5
CDX1P47902 AC130360.2-201ENST00000533477 1556 ntBASIC5.71□□□□□ -1.5
CDX1P47902 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CDX1P47902 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CDX1P47902 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CDX1P47902 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CDX1P47902 CDC73-204ENST00000635846 3987 ntTSL 5 BASIC5.71□□□□□ -1.5
CDX1P47902 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC5.71□□□□□ -1.5
CDX1P47902 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.71□□□□□ -1.5
CDX1P47902 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CDX1P47902 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
CDX1P47902 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CDX1P47902 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.7□□□□□ -1.5
CDX1P47902 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CDX1P47902 OR2A3P-202ENST00000641249 1776 ntBASIC5.7□□□□□ -1.5
CDX1P47902 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
CDX1P47902 CIR1-201ENST00000342016 1921 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CDX1P47902 DTNA-205ENST00000399113 2232 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
CDX1P47902 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
CDX1P47902 IL22-201ENST00000328087 1150 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CDX1P47902 PPIAP22-201ENST00000358455 498 ntBASIC5.7□□□□□ -1.5
CDX1P47902 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC5.7□□□□□ -1.5
CDX1P47902 AC090114.1-201ENST00000393266 448 ntBASIC5.7□□□□□ -1.5
CDX1P47902 RNU4ATAC2P-201ENST00000408674 126 ntBASIC5.7□□□□□ -1.5
CDX1P47902 AP001043.1-203ENST00000415824 407 ntTSL 5 BASIC5.7□□□□□ -1.5
CDX1P47902 AL161742.1-201ENST00000418154 584 ntBASIC5.7□□□□□ -1.5
CDX1P47902 AL158070.1-201ENST00000421614 631 ntTSL 2 BASIC5.7□□□□□ -1.5
CDX1P47902 AC012485.2-201ENST00000437372 982 ntTSL 5 BASIC5.7□□□□□ -1.5
CDX1P47902 RHEBP1-201ENST00000448647 556 ntBASIC5.7□□□□□ -1.5
CDX1P47902 FREM2-AS1-201ENST00000448887 465 ntTSL 2 BASIC5.7□□□□□ -1.5
CDX1P47902 PMS2P11-201ENST00000451831 574 ntBASIC5.7□□□□□ -1.5
CDX1P47902 AC092675.1-203ENST00000454230 538 ntTSL 5 BASIC5.7□□□□□ -1.5
CDX1P47902 AC007386.1-201ENST00000455212 582 ntBASIC5.7□□□□□ -1.5
CDX1P47902 AC005515.1-201ENST00000456368 289 ntTSL 3 BASIC5.7□□□□□ -1.5
CDX1P47902 AC009411.2-201ENST00000458359 539 ntTSL 4 BASIC5.7□□□□□ -1.5
CDX1P47902 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.7□□□□□ -1.5
CDX1P47902 EIF4E2P2-201ENST00000492033 736 ntBASIC5.7□□□□□ -1.5
CDX1P47902 OR52A4P-203ENST00000498233 1014 ntBASIC5.7□□□□□ -1.5
CDX1P47902 SMR3B-202ENST00000504825 489 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
CDX1P47902 AC138409.2-202ENST00000507274 458 ntBASIC5.7□□□□□ -1.5
CDX1P47902 AC008417.1-201ENST00000510014 565 ntBASIC5.7□□□□□ -1.5
CDX1P47902 OR4C1P-201ENST00000530880 937 ntBASIC5.7□□□□□ -1.5
CDX1P47902 OR5F2P-201ENST00000532761 941 ntBASIC5.7□□□□□ -1.5
CDX1P47902 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC5.7□□□□□ -1.5
CDX1P47902 MYL6-211ENST00000548580 528 ntTSL 2 BASIC5.7□□□□□ -1.5
CDX1P47902 CRADD-210ENST00000552033 622 ntTSL 3 BASIC5.7□□□□□ -1.5
CDX1P47902 LINC01146-203ENST00000555996 459 ntTSL 2 BASIC5.7□□□□□ -1.5
CDX1P47902 AL049874.4-201ENST00000557593 255 ntBASIC5.7□□□□□ -1.5
CDX1P47902 AC007950.1-201ENST00000560465 615 ntTSL 3 BASIC5.7□□□□□ -1.5
CDX1P47902 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC5.7□□□□□ -1.5
CDX1P47902 AC138749.2-201ENST00000566048 167 ntBASIC5.7□□□□□ -1.5
CDX1P47902 CCDC58P1-201ENST00000578567 430 ntBASIC5.7□□□□□ -1.5
CDX1P47902 AC092944.2-201ENST00000605443 889 ntBASIC5.7□□□□□ -1.5
CDX1P47902 CNTNAP3P1-201ENST00000616657 906 ntBASIC5.7□□□□□ -1.5
CDX1P47902 MTCO1P1-201ENST00000624263 1081 ntBASIC5.7□□□□□ -1.5
CDX1P47902 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CDX1P47902 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.7□□□□□ -1.5
CDX1P47902 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
CDX1P47902 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms