Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RETREG1-202ENST00000399793 3145 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
COL5A3P25940 PPARA-201ENST00000262735 9965 ntAPPRIS P1 TSL 5 BASIC8.17□□□□□ -1.1
COL5A3P25940 AC135012.3-201ENST00000599841 4039 ntTSL 4 BASIC8.17□□□□□ -1.1
COL5A3P25940 SNORA51.1-201ENST00000363243 140 ntBASIC8.17□□□□□ -1.1
COL5A3P25940 RNA5SP284-201ENST00000384547 118 ntBASIC8.17□□□□□ -1.1
COL5A3P25940 BMS1P13-201ENST00000417301 885 ntBASIC8.17□□□□□ -1.1
COL5A3P25940 BMS1P10-201ENST00000443754 1120 ntBASIC8.17□□□□□ -1.1
COL5A3P25940 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC8.17□□□□□ -1.1
COL5A3P25940 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC8.17□□□□□ -1.1
COL5A3P25940 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC8.17□□□□□ -1.1
COL5A3P25940 RN7SKP238-201ENST00000516483 249 ntBASIC8.17□□□□□ -1.1
COL5A3P25940 RNA5SP434-201ENST00000516647 121 ntBASIC8.17□□□□□ -1.1
COL5A3P25940 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC8.17□□□□□ -1.1
COL5A3P25940 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC8.17□□□□□ -1.1
COL5A3P25940 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC8.17□□□□□ -1.1
COL5A3P25940 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC8.17□□□□□ -1.1
COL5A3P25940 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC8.17□□□□□ -1.1
COL5A3P25940 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC8.17□□□□□ -1.1
COL5A3P25940 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC8.17□□□□□ -1.1
COL5A3P25940 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC8.17□□□□□ -1.1
COL5A3P25940 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC8.17□□□□□ -1.1
COL5A3P25940 PIGN-230ENST00000638977 4601 ntTSL 5 BASIC8.17□□□□□ -1.1
COL5A3P25940 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC8.17□□□□□ -1.1
COL5A3P25940 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
COL5A3P25940 CREB3L2-207ENST00000616381 7133 ntTSL 5 BASIC8.17□□□□□ -1.1
COL5A3P25940 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC8.17□□□□□ -1.1
COL5A3P25940 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC8.17□□□□□ -1.1
COL5A3P25940 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
COL5A3P25940 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
COL5A3P25940 NECAP1-221ENST00000639955 3479 ntAPPRIS P2 TSL 5 BASIC8.16□□□□□ -1.1
COL5A3P25940 PPCS-201ENST00000372556 984 ntTSL 2 BASIC8.16□□□□□ -1.1
COL5A3P25940 C2orf76-203ENST00000409523 747 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
COL5A3P25940 AC079355.1-201ENST00000421770 223 ntBASIC8.16□□□□□ -1.1
COL5A3P25940 CYCSP52-201ENST00000422857 310 ntBASIC8.16□□□□□ -1.1
COL5A3P25940 AC063943.2-201ENST00000495697 534 ntBASIC8.16□□□□□ -1.1
COL5A3P25940 MTND6P8-201ENST00000503471 522 ntBASIC8.16□□□□□ -1.1
COL5A3P25940 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC8.16□□□□□ -1.1
COL5A3P25940 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC8.16□□□□□ -1.1
COL5A3P25940 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC8.16□□□□□ -1.1
COL5A3P25940 MIR4443-201ENST00000585052 53 ntBASIC8.16□□□□□ -1.1
COL5A3P25940 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC8.16□□□□□ -1.1
COL5A3P25940 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC8.16□□□□□ -1.1
COL5A3P25940 SGMS1-AS1-201ENST00000443374 12400 ntTSL 4 BASIC8.16□□□□□ -1.1
COL5A3P25940 DYNC1I2P1-201ENST00000435916 1838 ntBASIC8.16□□□□□ -1.1
COL5A3P25940 FRMPD2-201ENST00000305531 4665 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
COL5A3P25940 RNF41-212ENST00000615206 5216 ntAPPRIS P1 TSL 5 BASIC8.16□□□□□ -1.1
COL5A3P25940 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
COL5A3P25940 TTLL5-207ENST00000554510 2624 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
COL5A3P25940 UNC79-201ENST00000256339 8400 ntAPPRIS P2 TSL 5 BASIC8.16□□□□□ -1.1
COL5A3P25940 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC8.16□□□□□ -1.1
COL5A3P25940 AL035555.1-201ENST00000404462 1790 ntBASIC8.16□□□□□ -1.1
COL5A3P25940 ZMYND8-207ENST00000396281 5511 ntAPPRIS ALT2 TSL 2 BASIC8.15□□□□□ -1.1
COL5A3P25940 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC8.15□□□□□ -1.1
COL5A3P25940 AC125238.2-201ENST00000430003 1440 ntBASIC8.15□□□□□ -1.1
COL5A3P25940 DNAJC5G-203ENST00000404433 1647 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.1
COL5A3P25940 CTNND1-208ENST00000428599 6016 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
COL5A3P25940 CTNND1-232ENST00000532649 6026 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
COL5A3P25940 CTNND1-237ENST00000534579 6024 ntTSL 5 BASIC8.15□□□□□ -1.1
COL5A3P25940 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
COL5A3P25940 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
COL5A3P25940 TMSB4XP4-201ENST00000323496 618 ntBASIC8.15□□□□□ -1.1
COL5A3P25940 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
COL5A3P25940 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC8.15□□□□□ -1.1
COL5A3P25940 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC8.15□□□□□ -1.1
COL5A3P25940 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
COL5A3P25940 AP000281.1-201ENST00000444036 316 ntBASIC8.15□□□□□ -1.1
COL5A3P25940 RPL12P31-201ENST00000478433 450 ntBASIC8.15□□□□□ -1.1
COL5A3P25940 CR383658.1-201ENST00000514609 734 ntBASIC8.15□□□□□ -1.1
COL5A3P25940 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC8.15□□□□□ -1.1
COL5A3P25940 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC8.15□□□□□ -1.1
COL5A3P25940 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC8.15□□□□□ -1.1
COL5A3P25940 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC8.15□□□□□ -1.1
COL5A3P25940 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC8.15□□□□□ -1.1
COL5A3P25940 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC8.15□□□□□ -1.1
COL5A3P25940 KIF21A-204ENST00000544797 5040 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
COL5A3P25940 ENTPD5-207ENST00000557325 3096 ntTSL 2 BASIC8.15□□□□□ -1.1
COL5A3P25940 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC8.15□□□□□ -1.1
COL5A3P25940 OR13C1P-202ENST00000641378 2919 ntBASIC8.15□□□□□ -1.1
COL5A3P25940 CDH13-201ENST00000268613 2722 ntAPPRIS P4 TSL 2 BASIC8.15□□□□□ -1.1
COL5A3P25940 USP13-203ENST00000496897 2747 ntTSL 2 BASIC8.15□□□□□ -1.1
COL5A3P25940 PLEKHS1-203ENST00000369309 2534 ntTSL 5 BASIC8.15□□□□□ -1.1
COL5A3P25940 COG2-209ENST00000534989 2963 ntTSL 2 BASIC8.15□□□□□ -1.1
COL5A3P25940 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
COL5A3P25940 RTL3-201ENST00000321110 2648 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.1
COL5A3P25940 C18orf32-203ENST00000613385 5395 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.1
COL5A3P25940 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC8.15□□□□□ -1.1
COL5A3P25940 AC073065.1-201ENST00000411678 2866 ntBASIC8.15□□□□□ -1.1
COL5A3P25940 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
COL5A3P25940 ATP1A4-201ENST00000368081 3839 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
COL5A3P25940 LINC02179-201ENST00000561523 3673 ntTSL 1 (best) BASIC8.15□□□□□ -1.11
COL5A3P25940 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
COL5A3P25940 AC110373.1-201ENST00000505994 3505 ntBASIC8.15□□□□□ -1.11
COL5A3P25940 PLA2G7-202ENST00000537365 1747 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
COL5A3P25940 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC8.15□□□□□ -1.11
COL5A3P25940 OR52B3P-201ENST00000314715 928 ntBASIC8.15□□□□□ -1.11
COL5A3P25940 AL096711.1-201ENST00000404780 554 ntBASIC8.15□□□□□ -1.11
COL5A3P25940 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC8.15□□□□□ -1.11
COL5A3P25940 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.11
COL5A3P25940 LYPLA1P1-201ENST00000434514 622 ntBASIC8.15□□□□□ -1.11
COL5A3P25940 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC8.15□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms