Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC8.44□□□□□ -1.06
HMGB1P09429 BX323845.2-201ENST00000458382 234 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 PABPC1P10-201ENST00000464731 381 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC8.44□□□□□ -1.06
HMGB1P09429 VDAC2P2-201ENST00000544463 901 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC8.44□□□□□ -1.06
HMGB1P09429 AC023827.2-201ENST00000566880 1061 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC8.44□□□□□ -1.06
HMGB1P09429 AC011487.2-201ENST00000600193 1228 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
HMGB1P09429 AP005328.2-201ENST00000606879 657 ntTSL 3 BASIC8.44□□□□□ -1.06
HMGB1P09429 AC016911.1-201ENST00000613297 452 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 BANCR-201ENST00000624238 473 ntTSL 2 BASIC8.44□□□□□ -1.06
HMGB1P09429 AC004943.1-203ENST00000624370 1074 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC8.44□□□□□ -1.06
HMGB1P09429 AC106712.1-201ENST00000483840 1888 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
HMGB1P09429 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC8.44□□□□□ -1.06
HMGB1P09429 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
HMGB1P09429 PTPRD-AS1-201ENST00000430766 1959 ntTSL 2 BASIC8.44□□□□□ -1.06
HMGB1P09429 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
HMGB1P09429 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
HMGB1P09429 AC107021.2-201ENST00000567714 2095 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
HMGB1P09429 AL121949.2-201ENST00000403446 1548 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 AC020633.1-201ENST00000468439 2247 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC8.43□□□□□ -1.06
HMGB1P09429 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
HMGB1P09429 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC8.43□□□□□ -1.06
HMGB1P09429 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
HMGB1P09429 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC8.43□□□□□ -1.06
HMGB1P09429 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC8.43□□□□□ -1.06
HMGB1P09429 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
HMGB1P09429 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC8.43□□□□□ -1.06
HMGB1P09429 TMCC1P1-201ENST00000518897 1980 ntBASIC8.43□□□□□ -1.06
HMGB1P09429 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC8.43□□□□□ -1.06
HMGB1P09429 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC8.43□□□□□ -1.06
HMGB1P09429 TTR-201ENST00000237014 957 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
HMGB1P09429 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC8.43□□□□□ -1.06
HMGB1P09429 RNA5SP472-201ENST00000363868 119 ntBASIC8.43□□□□□ -1.06
HMGB1P09429 ERMN-202ENST00000409216 746 ntTSL 4 BASIC8.43□□□□□ -1.06
HMGB1P09429 AC012451.1-201ENST00000412312 357 ntTSL 3 BASIC8.43□□□□□ -1.06
HMGB1P09429 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC8.43□□□□□ -1.06
HMGB1P09429 VN1R66P-201ENST00000412929 916 ntBASIC8.43□□□□□ -1.06
HMGB1P09429 PPIL1P1-201ENST00000423936 499 ntBASIC8.43□□□□□ -1.06
HMGB1P09429 PSMC1P2-201ENST00000423961 1204 ntBASIC8.43□□□□□ -1.06
HMGB1P09429 RBMY2JP-201ENST00000425544 1059 ntBASIC8.43□□□□□ -1.06
HMGB1P09429 ARL5AP3-201ENST00000439327 386 ntBASIC8.43□□□□□ -1.06
HMGB1P09429 AL606490.8-201ENST00000441624 319 ntBASIC8.43□□□□□ -1.06
HMGB1P09429 GAPDHP16-201ENST00000448152 962 ntBASIC8.43□□□□□ -1.06
HMGB1P09429 AL390728.3-201ENST00000452704 270 ntBASIC8.43□□□□□ -1.06
HMGB1P09429 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
HMGB1P09429 AC079594.1-201ENST00000489757 331 ntBASIC8.43□□□□□ -1.06
HMGB1P09429 AC109635.6-201ENST00000525487 1113 ntBASIC8.43□□□□□ -1.06
HMGB1P09429 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
HMGB1P09429 TMEM132D-AS1-207ENST00000542535 442 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
HMGB1P09429 AP003721.1-201ENST00000543907 864 ntTSL 3 BASIC8.43□□□□□ -1.06
HMGB1P09429 LYZ-202ENST00000548839 558 ntTSL 2 BASIC8.43□□□□□ -1.06
HMGB1P09429 LALBA-202ENST00000549817 1243 ntTSL 5 BASIC8.43□□□□□ -1.06
HMGB1P09429 SNHG14-217ENST00000552781 552 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
HMGB1P09429 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC8.43□□□□□ -1.06
HMGB1P09429 NR2F2-AS1-205ENST00000559505 1005 ntTSL 5 BASIC8.43□□□□□ -1.06
HMGB1P09429 AL031846.1-201ENST00000560933 314 ntBASIC8.43□□□□□ -1.06
HMGB1P09429 THSD4-AS1-204ENST00000566268 468 ntTSL 4 BASIC8.43□□□□□ -1.06
HMGB1P09429 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC8.43□□□□□ -1.06
HMGB1P09429 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC8.43□□□□□ -1.06
HMGB1P09429 AC016542.3-201ENST00000623520 619 ntBASIC8.43□□□□□ -1.06
HMGB1P09429 NPLOC4-221ENST00000625705 405 ntTSL 5 BASIC8.43□□□□□ -1.06
HMGB1P09429 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC8.43□□□□□ -1.06
HMGB1P09429 EEF1A1P20-201ENST00000514852 1386 ntBASIC8.43□□□□□ -1.06
HMGB1P09429 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC8.43□□□□□ -1.06
HMGB1P09429 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC8.43□□□□□ -1.06
HMGB1P09429 LINC02447-201ENST00000499242 1500 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
HMGB1P09429 AL450327.1-201ENST00000430931 2632 ntTSL 5 BASIC8.43□□□□□ -1.06
HMGB1P09429 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
HMGB1P09429 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC8.43□□□□□ -1.06
HMGB1P09429 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC8.43□□□□□ -1.06
HMGB1P09429 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC8.43□□□□□ -1.06
HMGB1P09429 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC8.43□□□□□ -1.06
HMGB1P09429 AP003175.1-201ENST00000641383 6658 ntBASIC8.43□□□□□ -1.06
HMGB1P09429 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC8.43□□□□□ -1.06
HMGB1P09429 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC8.43□□□□□ -1.06
HMGB1P09429 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
HMGB1P09429 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC8.42□□□□□ -1.06
HMGB1P09429 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
HMGB1P09429 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC8.42□□□□□ -1.06
HMGB1P09429 AL355306.2-202ENST00000634380 2281 ntTSL 5 BASIC8.42□□□□□ -1.06
HMGB1P09429 FHL1-227ENST00000628568 2304 ntTSL 5 BASIC8.42□□□□□ -1.06
HMGB1P09429 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC8.42□□□□□ -1.06
HMGB1P09429 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
HMGB1P09429 DEPDC1B-201ENST00000265036 2499 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HMGB1P09429 FOXP2-201ENST00000350908 2638 ntAPPRIS P2 TSL 1 (best) BASIC8.42□□□□□ -1.06
HMGB1P09429 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC8.42□□□□□ -1.06
HMGB1P09429 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC8.42□□□□□ -1.06
HMGB1P09429 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
HMGB1P09429 RN7SKP186-201ENST00000365371 303 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 AC083799.1-201ENST00000366451 910 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 MIR152-201ENST00000385212 87 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 IGLV5-52-201ENST00000390289 379 ntAPPRIS P1 BASIC8.42□□□□□ -1.06
HMGB1P09429 SNORD65-201ENST00000391079 73 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC8.42□□□□□ -1.06
HMGB1P09429 RN7SKP254-201ENST00000410685 310 ntBASIC8.42□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 201 ms