Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SUGT1P2-201ENST00000379452 992 ntBASIC10.99□□□□□ -0.65
CUX1P39880 AC079355.1-201ENST00000421770 223 ntBASIC10.99□□□□□ -0.65
CUX1P39880 PPIAP7-201ENST00000454070 489 ntBASIC10.99□□□□□ -0.65
CUX1P39880 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC10.99□□□□□ -0.65
CUX1P39880 RN7SL214P-201ENST00000487317 265 ntBASIC10.99□□□□□ -0.65
CUX1P39880 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CUX1P39880 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC10.99□□□□□ -0.65
CUX1P39880 NATP-201ENST00000523491 878 ntBASIC10.99□□□□□ -0.65
CUX1P39880 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CUX1P39880 AP000620.1-201ENST00000527147 504 ntBASIC10.99□□□□□ -0.65
CUX1P39880 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC10.99□□□□□ -0.65
CUX1P39880 AL049840.5-201ENST00000602827 552 ntBASIC10.99□□□□□ -0.65
CUX1P39880 CT45A7-201ENST00000610598 996 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CUX1P39880 FAM27E2-201ENST00000619668 403 ntBASIC10.99□□□□□ -0.65
CUX1P39880 AC131009.3-201ENST00000621809 287 ntBASIC10.99□□□□□ -0.65
CUX1P39880 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC10.98□□□□□ -0.65
CUX1P39880 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC10.98□□□□□ -0.65
CUX1P39880 ZNF43-201ENST00000354959 2881 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
CUX1P39880 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC10.98□□□□□ -0.65
CUX1P39880 AC093225.1-201ENST00000506867 1408 ntBASIC10.98□□□□□ -0.65
CUX1P39880 AL355306.2-201ENST00000635570 1542 ntTSL 5 BASIC10.98□□□□□ -0.65
CUX1P39880 ATF7-202ENST00000456903 5218 ntAPPRIS P2 TSL 5 BASIC10.98□□□□□ -0.65
CUX1P39880 CREB3L2-207ENST00000616381 7133 ntTSL 5 BASIC10.98□□□□□ -0.65
CUX1P39880 C14orf37-201ENST00000267485 6495 ntAPPRIS P2 TSL 1 (best) BASIC10.98□□□□□ -0.65
CUX1P39880 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
CUX1P39880 PARD3-212ENST00000544292 2475 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
CUX1P39880 ITSN2-202ENST00000361999 5814 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
CUX1P39880 OR4C1P-202ENST00000641065 1569 ntBASIC10.98□□□□□ -0.65
CUX1P39880 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC10.98□□□□□ -0.65
CUX1P39880 RNA5SP273-201ENST00000362484 113 ntBASIC10.98□□□□□ -0.65
CUX1P39880 AC087752.1-201ENST00000391360 558 ntBASIC10.98□□□□□ -0.65
CUX1P39880 AC244452.1-201ENST00000413798 141 ntBASIC10.98□□□□□ -0.65
CUX1P39880 RN7SL177P-201ENST00000476596 299 ntBASIC10.98□□□□□ -0.65
CUX1P39880 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC10.98□□□□□ -0.65
CUX1P39880 AL158068.1-201ENST00000506116 616 ntBASIC10.98□□□□□ -0.65
CUX1P39880 PTTG3P-201ENST00000521862 606 ntBASIC10.98□□□□□ -0.65
CUX1P39880 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC10.98□□□□□ -0.65
CUX1P39880 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
CUX1P39880 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC10.98□□□□□ -0.65
CUX1P39880 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC10.98□□□□□ -0.65
CUX1P39880 AC012358.3-204ENST00000599475 978 ntTSL 3 BASIC10.98□□□□□ -0.65
CUX1P39880 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC10.98□□□□□ -0.65
CUX1P39880 SCN11A-201ENST00000302328 6500 ntAPPRIS P2 TSL 5 BASIC10.98□□□□□ -0.65
CUX1P39880 ATP7B-206ENST00000448424 6404 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
CUX1P39880 AC027575.3-201ENST00000583058 2747 ntBASIC10.98□□□□□ -0.65
CUX1P39880 CGNL1-201ENST00000281282 7224 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
CUX1P39880 AC135012.3-201ENST00000599841 4039 ntTSL 4 BASIC10.98□□□□□ -0.65
CUX1P39880 SNCAIP-201ENST00000261367 4986 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CUX1P39880 ZBTB40-201ENST00000374651 8368 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CUX1P39880 WDR7-202ENST00000357574 7213 ntTSL 5 BASIC10.97□□□□□ -0.65
CUX1P39880 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC10.97□□□□□ -0.65
CUX1P39880 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CUX1P39880 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CUX1P39880 CIR1P2-201ENST00000514821 1342 ntBASIC10.97□□□□□ -0.65
CUX1P39880 FMN2-206ENST00000543681 2902 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CUX1P39880 LINC02334-201ENST00000617568 4959 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CUX1P39880 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC10.97□□□□□ -0.65
CUX1P39880 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC10.97□□□□□ -0.65
CUX1P39880 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
CUX1P39880 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC10.97□□□□□ -0.65
CUX1P39880 AC017035.1-201ENST00000411999 1115 ntBASIC10.97□□□□□ -0.65
CUX1P39880 BX510359.3-201ENST00000422168 306 ntBASIC10.97□□□□□ -0.65
CUX1P39880 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC10.97□□□□□ -0.65
CUX1P39880 AC022415.1-202ENST00000486612 523 ntBASIC10.97□□□□□ -0.65
CUX1P39880 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC10.97□□□□□ -0.65
CUX1P39880 PRMT5P1-201ENST00000514351 598 ntBASIC10.97□□□□□ -0.65
CUX1P39880 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC10.97□□□□□ -0.65
CUX1P39880 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC10.97□□□□□ -0.65
CUX1P39880 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
CUX1P39880 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC10.97□□□□□ -0.65
CUX1P39880 AC007346.1-201ENST00000569208 867 ntBASIC10.97□□□□□ -0.65
CUX1P39880 CELF2-209ENST00000631460 5538 ntTSL 5 BASIC10.97□□□□□ -0.65
CUX1P39880 AL133243.2-201ENST00000610331 1621 ntBASIC10.97□□□□□ -0.65
CUX1P39880 RBM43-201ENST00000331426 4192 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CUX1P39880 FRMPD2-213ENST00000636244 4194 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
CUX1P39880 C10orf67-204ENST00000636213 3981 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
CUX1P39880 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC10.96□□□□□ -0.65
CUX1P39880 TRIM49-201ENST00000329758 2163 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
CUX1P39880 TRIM49C-201ENST00000448984 2163 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CUX1P39880 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CUX1P39880 AL353743.3-201ENST00000442109 1468 ntBASIC10.96□□□□□ -0.65
CUX1P39880 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CUX1P39880 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CUX1P39880 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC10.96□□□□□ -0.65
CUX1P39880 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CUX1P39880 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC10.96□□□□□ -0.65
CUX1P39880 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC10.96□□□□□ -0.65
CUX1P39880 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC10.96□□□□□ -0.65
CUX1P39880 AC092683.1-202ENST00000620023 754 ntTSL 3 BASIC10.96□□□□□ -0.65
CUX1P39880 AC159540.2-201ENST00000621110 754 ntTSL 3 BASIC10.96□□□□□ -0.65
CUX1P39880 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC10.96□□□□□ -0.65
CUX1P39880 NAV2-213ENST00000533917 5084 ntTSL 2 BASIC10.96□□□□□ -0.65
CUX1P39880 MITF-201ENST00000314557 1798 ntAPPRIS ALT1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CUX1P39880 EYA4-201ENST00000355167 5692 ntTSL 5 BASIC10.96□□□□□ -0.66
CUX1P39880 PCDH15-210ENST00000395438 5806 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.66
CUX1P39880 PTCD3-201ENST00000254630 6734 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
CUX1P39880 AP003486.1-201ENST00000525716 3994 ntBASIC10.96□□□□□ -0.66
CUX1P39880 CDH17-202ENST00000441892 2204 ntTSL 2 BASIC10.96□□□□□ -0.66
CUX1P39880 KNG1-202ENST00000287611 1720 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.66
CUX1P39880 MGAT5-202ENST00000409645 8252 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms