Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
HLA-DOAP06340 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC8.04□□□□□ -1.12
HLA-DOAP06340 AC011447.6-201ENST00000623510 2598 ntBASIC8.04□□□□□ -1.12
HLA-DOAP06340 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC8.04□□□□□ -1.12
HLA-DOAP06340 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 SLC3A1-204ENST00000409380 2424 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-DOAP06340 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-DOAP06340 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-DOAP06340 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 TLR10-202ENST00000361424 3484 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-DOAP06340 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-DOAP06340 RNA5SP140-201ENST00000364524 92 ntBASIC8.03□□□□□ -1.12
HLA-DOAP06340 XAGE5-202ENST00000375501 415 ntAPPRIS P1 TSL 5 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 NOX4-203ENST00000375979 816 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-DOAP06340 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 RPL5P5-201ENST00000392009 893 ntBASIC8.03□□□□□ -1.12
HLA-DOAP06340 OOSP1-201ENST00000398992 1270 ntBASIC8.03□□□□□ -1.12
HLA-DOAP06340 MTND6P1-201ENST00000417434 424 ntBASIC8.03□□□□□ -1.12
HLA-DOAP06340 RFESDP1-201ENST00000422350 461 ntBASIC8.03□□□□□ -1.12
HLA-DOAP06340 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 RPL5P34-201ENST00000426545 891 ntBASIC8.03□□□□□ -1.12
HLA-DOAP06340 AL356481.1-202ENST00000426704 970 ntTSL 2 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-DOAP06340 RPL5P9-201ENST00000448118 886 ntBASIC8.03□□□□□ -1.12
HLA-DOAP06340 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 AC117394.1-201ENST00000477323 567 ntBASIC8.03□□□□□ -1.12
HLA-DOAP06340 AC021220.1-201ENST00000507445 630 ntBASIC8.03□□□□□ -1.12
HLA-DOAP06340 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-DOAP06340 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 RN7SKP183-201ENST00000517169 324 ntBASIC8.03□□□□□ -1.12
HLA-DOAP06340 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-DOAP06340 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 ANP32BP1-202ENST00000568553 737 ntBASIC8.03□□□□□ -1.12
HLA-DOAP06340 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-DOAP06340 AC091133.5-201ENST00000603088 301 ntBASIC8.03□□□□□ -1.12
HLA-DOAP06340 AL158211.2-201ENST00000607282 395 ntBASIC8.03□□□□□ -1.12
HLA-DOAP06340 AC068726.1-201ENST00000610993 341 ntBASIC8.03□□□□□ -1.12
HLA-DOAP06340 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 FBXW7-201ENST00000263981 3743 ntAPPRIS ALT1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-DOAP06340 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-DOAP06340 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-DOAP06340 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 CDH18-207ENST00000507958 3542 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
HLA-DOAP06340 NHLRC3-201ENST00000379599 3275 ntTSL 1 (best) BASIC8.02□□□□□ -1.12
HLA-DOAP06340 MS4A7-202ENST00000358246 2871 ntTSL 3 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 AC005614.1-201ENST00000598952 3653 ntBASIC8.02□□□□□ -1.13
HLA-DOAP06340 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
HLA-DOAP06340 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
HLA-DOAP06340 RN7SKP250-201ENST00000363924 321 ntBASIC8.02□□□□□ -1.13
HLA-DOAP06340 RNA5SP85-201ENST00000365378 119 ntBASIC8.02□□□□□ -1.13
HLA-DOAP06340 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 AL663061.1-201ENST00000416625 580 ntBASIC8.02□□□□□ -1.13
HLA-DOAP06340 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 LAPTM4BP1-201ENST00000447781 690 ntBASIC8.02□□□□□ -1.13
HLA-DOAP06340 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 AC019084.1-201ENST00000457337 432 ntBASIC8.02□□□□□ -1.13
HLA-DOAP06340 AC026826.1-201ENST00000493002 361 ntBASIC8.02□□□□□ -1.13
HLA-DOAP06340 AC007106.1-201ENST00000509666 600 ntTSL 4 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 AL390198.2-201ENST00000510553 222 ntBASIC8.02□□□□□ -1.13
HLA-DOAP06340 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 AC037479.1-201ENST00000558361 625 ntBASIC8.02□□□□□ -1.13
HLA-DOAP06340 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 CTSLP2-201ENST00000580501 394 ntBASIC8.02□□□□□ -1.13
HLA-DOAP06340 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 Z98949.1-213ENST00000608921 856 ntTSL 5 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 AL391262.2-201ENST00000622466 494 ntBASIC8.02□□□□□ -1.13
HLA-DOAP06340 AL157778.1-201ENST00000626665 729 ntTSL 3 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 LINC01108-202ENST00000635227 776 ntTSL 3 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 RPS27L-208ENST00000635699 693 ntTSL 5 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 CLCN3-202ENST00000360642 3208 ntTSL 2 BASIC8.02□□□□□ -1.13
HLA-DOAP06340 TEFM-204ENST00000580840 2109 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
HLA-DOAP06340 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
HLA-DOAP06340 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
HLA-DOAP06340 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
HLA-DOAP06340 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
HLA-DOAP06340 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC8.01□□□□□ -1.13
HLA-DOAP06340 HCG18-240ENST00000454269 2430 ntTSL 2 BASIC8.01□□□□□ -1.13
HLA-DOAP06340 CRB1-210ENST00000538660 3397 ntTSL 2 BASIC8.01□□□□□ -1.13
HLA-DOAP06340 ZNF410-205ENST00000442160 2076 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
HLA-DOAP06340 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC8.01□□□□□ -1.13
HLA-DOAP06340 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
HLA-DOAP06340 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC8.01□□□□□ -1.13
HLA-DOAP06340 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC8.01□□□□□ -1.13
HLA-DOAP06340 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC8.01□□□□□ -1.13
HLA-DOAP06340 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC8.01□□□□□ -1.13
HLA-DOAP06340 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC8.01□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms