Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RN7SKP236-201ENST00000410635 284 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 LINC01704-201ENST00000414848 834 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 AP001468.1-201ENST00000415026 557 ntTSL 4 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 EIF4A1P13-201ENST00000415667 230 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 LINC01687-203ENST00000420255 897 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 RPSAP1-201ENST00000421328 880 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 AL158070.1-201ENST00000421614 631 ntTSL 2 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 AC092646.1-201ENST00000427142 901 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 PABPC1P10-201ENST00000464731 381 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 RPL5P15-201ENST00000475870 897 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 CREM-242ENST00000490511 469 ntTSL 2 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 RPL12P7-201ENST00000493832 494 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 AC106798.1-202ENST00000506819 589 ntTSL 4 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 AK6-204ENST00000512561 587 ntTSL 5 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 EEF1B2P2-201ENST00000519625 676 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 AP002336.1-201ENST00000531426 422 ntTSL 2 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 FXNP1-201ENST00000555153 337 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 AL132640.2-202ENST00000559732 614 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 AC022405.1-201ENST00000559841 516 ntTSL 3 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 ACTG1P15-201ENST00000570019 1063 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 RN7SL42P-201ENST00000579786 294 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 AC068254.1-201ENST00000584753 483 ntTSL 3 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 AC068802.1-201ENST00000603420 732 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 AC111186.1-201ENST00000604684 130 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 NPLOC4-221ENST00000625705 405 ntTSL 5 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 FKBP1AP4-201ENST00000631775 336 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 AC004014.2-201ENST00000623718 5122 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 MFSD8-256ENST00000641949 1640 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 ATP10D-203ENST00000504445 2550 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 RGS5-215ENST00000439699 1441 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 DCX-206ENST00000496551 1320 ntAPPRIS P4 TSL 2 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
NKX3-1Q99801 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
NKX3-1Q99801 ZMYND11-215ENST00000558098 1859 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
NKX3-1Q99801 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
NKX3-1Q99801 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
NKX3-1Q99801 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
NKX3-1Q99801 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
NKX3-1Q99801 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 OR7G2-202ENST00000641081 3015 ntAPPRIS ALT2 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
NKX3-1Q99801 TTR-201ENST00000237014 957 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
NKX3-1Q99801 TPPP2-201ENST00000321760 752 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
NKX3-1Q99801 MIR205HG-201ENST00000366437 704 ntTSL 3 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 TAAR2-202ENST00000367931 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
NKX3-1Q99801 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 AC007384.1-202ENST00000417026 891 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
NKX3-1Q99801 NIP7P1-201ENST00000433227 512 ntBASIC5.98□□□□□ -1.45
NKX3-1Q99801 HCG20-208ENST00000439406 1202 ntTSL 2 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 DBIL5P2-201ENST00000443827 253 ntBASIC5.98□□□□□ -1.45
NKX3-1Q99801 AL136115.1-201ENST00000447478 517 ntTSL 2 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 RN7SL392P-201ENST00000473024 299 ntBASIC5.98□□□□□ -1.45
NKX3-1Q99801 GLYCTK-AS1-203ENST00000493616 445 ntTSL 3 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 CYB5A-204ENST00000494131 776 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
NKX3-1Q99801 IGHVII-49-1-201ENST00000521760 224 ntBASIC5.98□□□□□ -1.45
NKX3-1Q99801 AC011410.1-201ENST00000524175 705 ntTSL 5 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 AC013356.3-201ENST00000558601 584 ntTSL 3 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 AP006587.6-201ENST00000582128 1091 ntBASIC5.98□□□□□ -1.45
NKX3-1Q99801 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC5.98□□□□□ -1.45
NKX3-1Q99801 ZEB2-AS1-206ENST00000602006 572 ntTSL 5 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 FXYD6P1-201ENST00000604857 285 ntBASIC5.98□□□□□ -1.45
NKX3-1Q99801 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC5.98□□□□□ -1.45
NKX3-1Q99801 AC092683.1-202ENST00000620023 754 ntTSL 3 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 uc_338.37-201ENST00000620113 186 ntBASIC5.98□□□□□ -1.45
NKX3-1Q99801 AL121985.3-201ENST00000620690 523 ntBASIC5.98□□□□□ -1.45
NKX3-1Q99801 AC159540.2-201ENST00000621110 754 ntTSL 3 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 AC131009.3-201ENST00000621809 287 ntBASIC5.98□□□□□ -1.45
NKX3-1Q99801 AL596275.2-208ENST00000641192 594 ntBASIC5.98□□□□□ -1.45
NKX3-1Q99801 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
NKX3-1Q99801 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
NKX3-1Q99801 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
NKX3-1Q99801 ABCA11P-202ENST00000504019 2110 ntBASIC5.98□□□□□ -1.45
NKX3-1Q99801 QRSL1P3-201ENST00000552666 1316 ntBASIC5.98□□□□□ -1.45
NKX3-1Q99801 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC5.98□□□□□ -1.45
NKX3-1Q99801 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 CDY5P-201ENST00000411487 1580 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 CDY9P-201ENST00000451397 1580 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC5.97□□□□□ -1.45
NKX3-1Q99801 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms