Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC008417.1-201ENST00000510014 565 ntBASIC6.79□□□□□ -1.32
VMP1Q96GC9 AC134698.1-201ENST00000511619 643 ntBASIC6.79□□□□□ -1.32
VMP1Q96GC9 AC087855.2-201ENST00000518217 537 ntTSL 3 BASIC6.79□□□□□ -1.32
VMP1Q96GC9 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
VMP1Q96GC9 AL157871.5-201ENST00000555212 533 ntTSL 2 BASIC6.79□□□□□ -1.32
VMP1Q96GC9 AC023908.2-201ENST00000558616 318 ntTSL 3 BASIC6.79□□□□□ -1.32
VMP1Q96GC9 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC6.79□□□□□ -1.32
VMP1Q96GC9 MT1B-202ENST00000562399 351 ntTSL 3 BASIC6.79□□□□□ -1.32
VMP1Q96GC9 MED31-202ENST00000574128 619 ntTSL 3 BASIC6.79□□□□□ -1.32
VMP1Q96GC9 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC6.79□□□□□ -1.32
VMP1Q96GC9 ZEB2-AS1-206ENST00000602006 572 ntTSL 5 BASIC6.79□□□□□ -1.32
VMP1Q96GC9 AC087468.1-201ENST00000604365 630 ntBASIC6.79□□□□□ -1.32
VMP1Q96GC9 AC005070.2-201ENST00000604391 260 ntBASIC6.79□□□□□ -1.32
VMP1Q96GC9 AC016747.2-203ENST00000606876 289 ntTSL 3 BASIC6.79□□□□□ -1.32
VMP1Q96GC9 AL121809.2-201ENST00000613169 341 ntBASIC6.79□□□□□ -1.32
VMP1Q96GC9 AC098590.2-201ENST00000614787 281 ntBASIC6.79□□□□□ -1.32
VMP1Q96GC9 AC022960.2-201ENST00000616300 666 ntBASIC6.79□□□□□ -1.32
VMP1Q96GC9 HOTTIP_2.1-201ENST00000616633 376 ntBASIC6.79□□□□□ -1.32
VMP1Q96GC9 AC078909.2-201ENST00000620584 398 ntBASIC6.79□□□□□ -1.32
VMP1Q96GC9 CU638689.4-205ENST00000623313 596 ntTSL 4 BASIC6.79□□□□□ -1.32
VMP1Q96GC9 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
VMP1Q96GC9 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC6.79□□□□□ -1.32
VMP1Q96GC9 PDAP1-205ENST00000626285 120 ntTSL 5 BASIC6.79□□□□□ -1.32
VMP1Q96GC9 GALNTL5-206ENST00000431418 1678 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
VMP1Q96GC9 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
VMP1Q96GC9 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC6.79□□□□□ -1.32
VMP1Q96GC9 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
VMP1Q96GC9 MMACHC-203ENST00000616135 1510 ntTSL 2 BASIC6.79□□□□□ -1.32
VMP1Q96GC9 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
VMP1Q96GC9 AADAC-201ENST00000232892 1642 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
VMP1Q96GC9 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
VMP1Q96GC9 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
VMP1Q96GC9 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
VMP1Q96GC9 CYP19A1-216ENST00000559878 1958 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
VMP1Q96GC9 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 QRSL1P3-201ENST00000552666 1316 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
VMP1Q96GC9 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
VMP1Q96GC9 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
VMP1Q96GC9 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
VMP1Q96GC9 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
VMP1Q96GC9 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
VMP1Q96GC9 TTR-201ENST00000237014 957 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
VMP1Q96GC9 MTHFD2P5-201ENST00000320415 844 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 NPL-202ENST00000367552 745 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
VMP1Q96GC9 SNORA70.8-201ENST00000384231 136 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 TRBV19-201ENST00000390393 552 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 YWHAZP5-201ENST00000419975 730 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 FDPSP6-201ENST00000425091 512 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 CYP4F34P-201ENST00000425951 481 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 AL162231.2-201ENST00000434627 665 ntTSL 2 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 AL161626.1-201ENST00000441480 490 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
VMP1Q96GC9 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
VMP1Q96GC9 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 AC019080.2-201ENST00000453859 394 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 AC104849.1-201ENST00000462623 405 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 AC084024.1-201ENST00000476186 621 ntTSL 5 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 AC079594.1-201ENST00000489757 331 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 SUMO2P4-201ENST00000504193 276 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 RNA5SP75-201ENST00000516841 111 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 IGHVII-49-1-201ENST00000521760 224 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 OR4C1P-201ENST00000530880 937 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 AC103855.4-201ENST00000533158 265 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 PRB1-203ENST00000545626 710 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
VMP1Q96GC9 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 AC090826.1-201ENST00000564109 915 ntTSL 2 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 AL023284.3-202ENST00000571188 543 ntTSL 5 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 RN7SL689P-201ENST00000577215 297 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 AC090241.1-201ENST00000587732 621 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 AC027271.1-201ENST00000610270 610 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 AC211433.3-201ENST00000623770 375 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 AC017002.5-201ENST00000630717 871 ntTSL 5 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
VMP1Q96GC9 CA1-225ENST00000626824 2405 ntTSL 5 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 P3H2-203ENST00000427335 2963 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
VMP1Q96GC9 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC6.78□□□□□ -1.32
VMP1Q96GC9 AC011374.1-201ENST00000564471 1567 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
VMP1Q96GC9 AL596244.1-201ENST00000567068 3779 ntBASIC6.78□□□□□ -1.32
VMP1Q96GC9 OR5M2P-202ENST00000641241 4242 ntBASIC6.77□□□□□ -1.32
VMP1Q96GC9 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC6.77□□□□□ -1.32
VMP1Q96GC9 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC6.77□□□□□ -1.32
VMP1Q96GC9 AL929601.4-201ENST00000613011 1341 ntBASIC6.77□□□□□ -1.32
VMP1Q96GC9 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC6.77□□□□□ -1.33
VMP1Q96GC9 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.77□□□□□ -1.33
VMP1Q96GC9 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
VMP1Q96GC9 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.77□□□□□ -1.33
VMP1Q96GC9 DCP1B-205ENST00000540622 1547 ntTSL 5 BASIC6.77□□□□□ -1.33
VMP1Q96GC9 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.77□□□□□ -1.33
VMP1Q96GC9 SLC16A4-202ENST00000369781 2082 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
VMP1Q96GC9 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
VMP1Q96GC9 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms