Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL135978.1-201ENST00000553618 1266 ntBASIC5.24□□□□□ -1.57
HLA-DMBP28068 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HLA-DMBP28068 AC004494.1-202ENST00000573820 480 ntTSL 4 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 AC015818.6-201ENST00000584274 634 ntBASIC5.24□□□□□ -1.57
HLA-DMBP28068 PRR13P5-201ENST00000596581 442 ntBASIC5.24□□□□□ -1.57
HLA-DMBP28068 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC5.24□□□□□ -1.57
HLA-DMBP28068 AL161931.1-201ENST00000612768 246 ntBASIC5.24□□□□□ -1.57
HLA-DMBP28068 AC027506.1-201ENST00000621395 198 ntBASIC5.24□□□□□ -1.57
HLA-DMBP28068 AL049541.2-201ENST00000626377 555 ntBASIC5.24□□□□□ -1.57
HLA-DMBP28068 ASB8-218ENST00000629941 278 ntTSL 5 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 JAML-213ENST00000640745 951 ntTSL 5 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 OR5P3-202ENST00000641167 1193 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HLA-DMBP28068 TEK-202ENST00000406359 3935 ntTSL 2 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HLA-DMBP28068 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HLA-DMBP28068 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HLA-DMBP28068 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 CREM-216ENST00000429130 1476 ntTSL 5 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HLA-DMBP28068 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HLA-DMBP28068 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 CCDC150P1-201ENST00000537123 2215 ntBASIC5.24□□□□□ -1.57
HLA-DMBP28068 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HLA-DMBP28068 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HLA-DMBP28068 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 MAPK10-207ENST00000395166 3085 ntAPPRIS P2 TSL 2 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HLA-DMBP28068 DTNA-201ENST00000269192 1964 ntTSL 2 BASIC5.24□□□□□ -1.57
HLA-DMBP28068 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HLA-DMBP28068 PABPC1P8-201ENST00000452851 2086 ntBASIC5.24□□□□□ -1.57
HLA-DMBP28068 LDHA-206ENST00000430553 1310 ntTSL 2 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HLA-DMBP28068 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 EEF1A1P16-201ENST00000325349 1414 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 AC125232.1-201ENST00000452554 1408 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HLA-DMBP28068 AC093278.2-201ENST00000564956 2485 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 TTC33-207ENST00000637375 1824 ntTSL 5 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 AC010401.2-201ENST00000575137 4934 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HLA-DMBP28068 AC007114.2-201ENST00000576014 4281 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HLA-DMBP28068 TAS2R7-201ENST00000240687 1096 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 OR51M1-201ENST00000328611 1058 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 RN7SKP47-201ENST00000365347 328 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 SNORA70.5-201ENST00000365519 135 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 RNA5SP35-201ENST00000391257 129 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 NPM1P31-201ENST00000399021 764 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 RN7SKP148-201ENST00000410179 275 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 MKX-AS1-201ENST00000412244 745 ntTSL 3 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 RPSAP60-201ENST00000415403 880 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 FTLP17-201ENST00000432567 525 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 AC010878.1-201ENST00000456500 1047 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 FTH1P8-201ENST00000498161 514 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 AC105391.1-201ENST00000503155 1045 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 NACAP6-201ENST00000509572 622 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 OR9L1P-201ENST00000529493 933 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 AP006587.5-201ENST00000532033 739 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 LYZ-202ENST00000548839 558 ntTSL 2 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 LALBA-202ENST00000549817 1243 ntTSL 5 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 AC023080.1-201ENST00000551663 931 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 AC090971.3-201ENST00000557871 1041 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 AC015914.1-201ENST00000558050 1072 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HLA-DMBP28068 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 FAM30C-201ENST00000561158 410 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 MIR744-201ENST00000578242 98 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 AL512430.4-201ENST00000603085 613 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 MIR663AHG-237ENST00000615682 1030 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HLA-DMBP28068 AC007347.2-201ENST00000623044 180 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 AC093909.6-201ENST00000624757 775 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 AC243725.1-201ENST00000637164 436 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 CDY10P-201ENST00000452415 1567 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HLA-DMBP28068 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HLA-DMBP28068 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
HLA-DMBP28068 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
HLA-DMBP28068 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HLA-DMBP28068 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HLA-DMBP28068 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms