Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PUDPP2-201ENST00000431423 643 ntBASIC2.12□□□□□ -2.07
SYNE1Q8NF91 OR51P1P-201ENST00000447547 942 ntBASIC2.12□□□□□ -2.07
SYNE1Q8NF91 EAF2-202ENST00000451944 960 ntTSL 2 BASIC2.12□□□□□ -2.07
SYNE1Q8NF91 AC087752.2-201ENST00000521219 281 ntBASIC2.12□□□□□ -2.07
SYNE1Q8NF91 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC2.12□□□□□ -2.07
SYNE1Q8NF91 IGLVI-42-201ENST00000522485 381 ntBASIC2.12□□□□□ -2.07
SYNE1Q8NF91 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
SYNE1Q8NF91 TEX46-202ENST00000566855 510 ntAPPRIS P2 TSL 2 BASIC2.12□□□□□ -2.07
SYNE1Q8NF91 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC2.12□□□□□ -2.07
SYNE1Q8NF91 STX8-209ENST00000574431 731 ntTSL 3 BASIC2.12□□□□□ -2.07
SYNE1Q8NF91 EFCAB8-204ENST00000618684 435 ntTSL 5 BASIC2.12□□□□□ -2.07
SYNE1Q8NF91 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC2.12□□□□□ -2.07
SYNE1Q8NF91 AC116535.1-201ENST00000499765 2335 ntTSL 2 BASIC2.12□□□□□ -2.07
SYNE1Q8NF91 IL5RA-203ENST00000383846 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
SYNE1Q8NF91 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
SYNE1Q8NF91 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
SYNE1Q8NF91 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 VTI1A-202ENST00000432306 1738 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 GJC1-201ENST00000330514 3295 ntAPPRIS P1 TSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 MID1-212ENST00000616003 1926 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 SEC23IP-201ENST00000369075 7168 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RNA5SP433-201ENST00000364491 114 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RPL34P19-201ENST00000415903 342 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 GEMIN2P2-201ENST00000418195 715 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC092106.2-201ENST00000436597 487 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC013399.1-201ENST00000450311 418 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC018638.3-201ENST00000461273 132 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RN7SL797P-201ENST00000486314 297 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC079921.2-201ENST00000507579 455 ntTSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC021979.2-201ENST00000553644 209 ntTSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AL390877.1-201ENST00000605704 214 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC016405.2-201ENST00000607393 312 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 CXCR4-201ENST00000241393 1682 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 FAM217B-202ENST00000360816 5036 ntAPPRIS P2 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 MGAT5-202ENST00000409645 8252 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 DUXAP8-203ENST00000437781 2398 ntTSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 STK4-202ENST00000372806 6342 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 PGRMC2-202ENST00000394276 2858 ntTSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 PDCL3P5-201ENST00000398028 722 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RN7SKP129-201ENST00000410288 299 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 VAV3-203ENST00000415432 1293 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AL139042.1-201ENST00000429137 305 ntTSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC019055.1-201ENST00000432822 443 ntTSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC099340.1-201ENST00000475247 599 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC131233.1-201ENST00000479200 955 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AL132640.1-201ENST00000559594 619 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 BLID-201ENST00000560104 862 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC092142.1-202ENST00000567021 829 ntTSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC020914.7-201ENST00000594477 545 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 TP53TG1_2.1-201ENST00000611226 182 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 SATB1-AS1-242ENST00000627496 807 ntTSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 DLC1-202ENST00000316609 1837 ntTSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 CACNB4-270ENST00000638040 2026 ntTSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 PLCXD2-205ENST00000636933 7710 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 LINC00575-201ENST00000426551 910 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC079807.1-201ENST00000429993 481 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RN7SL153P-201ENST00000486501 292 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 OR4A41P-201ENST00000533053 928 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC012464.1-201ENST00000550687 540 ntTSL 4 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 LINC01974-201ENST00000575126 494 ntTSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 APOC2-205ENST00000592257 444 ntTSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 SIGLECL1-205ENST00000597824 870 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC073862.4-201ENST00000622982 854 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AL683826.1-201ENST00000624104 627 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 PTPRT-207ENST00000373201 12660 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 LINC01788-201ENST00000419450 2086 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 IL24-207ENST00000611909 1621 ntTSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 SAR1A-202ENST00000373238 3227 ntAPPRIS P1 TSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AP000941.1-201ENST00000530198 1388 ntTSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 STC1-201ENST00000290271 3883 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RPSAP65-201ENST00000429660 595 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC123904.1-201ENST00000441072 368 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 FUNDC2P2-202ENST00000443452 493 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RPL5P10-201ENST00000445207 894 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AL772337.3-201ENST00000447524 452 ntTSL 3 BASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms