Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 RN7SL869P-201ENST00000497032 300 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AC024451.1-201ENST00000508013 779 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AC119751.5-201ENST00000514077 770 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 CASP1P2-201ENST00000526830 1258 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 OR4A6P-201ENST00000534364 970 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AC068790.1-201ENST00000536166 355 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AC092868.1-201ENST00000557949 802 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 PCAT29-202ENST00000558941 545 ntTSL 4 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AL109741.3-201ENST00000561748 592 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AC090826.1-201ENST00000564109 915 ntTSL 2 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AC007346.1-201ENST00000569208 867 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AC027319.1-201ENST00000591657 511 ntTSL 3 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AP002782.1-201ENST00000623107 614 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 CU459211.1-201ENST00000635667 749 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AC025287.4-201ENST00000640173 1240 ntAPPRIS P1 TSL 5 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 OR10R2-202ENST00000641067 1132 ntAPPRIS ALT2 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 PROM1-210ENST00000510224 4006 ntAPPRIS P3 TSL 5 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 MLIP-201ENST00000274897 1815 ntAPPRIS P3 TSL 2 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 IL31RA-205ENST00000396836 2426 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 BFAR-201ENST00000261658 3039 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 MMADHC-202ENST00000422782 1462 ntTSL 5 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 LINC02111-201ENST00000505158 2312 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 TFDP2-222ENST00000495310 1442 ntAPPRIS ALT2 TSL 2 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 FUT10-206ENST00000518672 3115 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 ZNF611-204ENST00000543227 4517 ntAPPRIS P1 TSL 4 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 SPRY1-202ENST00000394339 2504 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC105760.1-201ENST00000244820 2231 ntTSL 2 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 THAP12P1-201ENST00000398672 2203 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 ZNF544-201ENST00000269829 3547 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 EPHA7-201ENST00000369297 1885 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC107419.1-201ENST00000422048 1879 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 GOT2P1-201ENST00000440922 1309 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 FHL1-206ENST00000394153 2374 ntTSL 5 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AL359220.1-202ENST00000500036 4499 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 PPARA-201ENST00000262735 9965 ntAPPRIS P1 TSL 5 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 RNA5SP463-201ENST00000363030 120 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AL450124.1-201ENST00000376401 353 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 LARP1P1-201ENST00000407692 292 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 RPL22P18-201ENST00000417197 377 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 LINC01347-201ENST00000417964 355 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AL596451.1-201ENST00000419824 572 ntTSL 5 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 ZEB1-AS1-202ENST00000424191 320 ntTSL 3 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 DNAJA1P1-201ENST00000425106 1187 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC009228.1-203ENST00000430105 432 ntTSL 3 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AL359502.1-201ENST00000437334 692 ntTSL 3 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 OR2L9P-201ENST00000444456 913 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC007000.1-201ENST00000453064 794 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AL035407.2-201ENST00000454090 378 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC002075.1-201ENST00000457396 676 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 LINC02530-201ENST00000457945 894 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC134050.1-201ENST00000495088 933 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC097451.1-201ENST00000507388 653 ntTSL 3 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 MTHFD2P4-201ENST00000515074 1025 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC084026.2-201ENST00000521101 642 ntTSL 3 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AL135934.1-201ENST00000527684 537 ntTSL 2 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AL117192.1-204ENST00000553485 449 ntTSL 2 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AL355102.4-201ENST00000553638 738 ntTSL 2 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC013489.1-201ENST00000561140 598 ntTSL 3 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 CSNK1A1P1-202ENST00000563423 981 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 CMC2-213ENST00000565914 528 ntAPPRIS P1 TSL 3 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 RBM22P12-201ENST00000567098 1255 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AL031722.1-201ENST00000570247 220 ntTSL 5 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 MIR4786-201ENST00000583954 80 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC008751.2-201ENST00000597885 980 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC000068.3-201ENST00000607934 427 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AP003068.4-201ENST00000623192 802 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 AL357140.4-201ENST00000636827 412 ntBASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 GOSR2-222ENST00000639031 885 ntTSL 3 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 MYT1L-AS1-202ENST00000448106 3230 ntTSL 2 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 BRD8-203ENST00000402931 2982 ntTSL 5 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 CACNA1D-219ENST00000636938 6868 ntAPPRIS ALT2 TSL 5 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 ANKS1B-211ENST00000547776 3885 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 CSNK2A3-201ENST00000528848 1416 ntAPPRIS P1 BASIC8.62□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms