Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 U1.41-201ENST00000617626 165 ntBASIC11.16□□□□□ -0.62
CUX1P39880 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CUX1P39880 AC130456.6-201ENST00000623745 765 ntBASIC11.16□□□□□ -0.62
CUX1P39880 HSPD1P4-201ENST00000547203 1702 ntBASIC11.16□□□□□ -0.62
CUX1P39880 SERPINB8-208ENST00000542677 3192 ntTSL 2 BASIC11.16□□□□□ -0.62
CUX1P39880 LRTOMT-210ENST00000447974 2007 ntTSL 2 BASIC11.16□□□□□ -0.62
CUX1P39880 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CUX1P39880 RAD54L2-201ENST00000409535 9776 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
CUX1P39880 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CUX1P39880 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CUX1P39880 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CUX1P39880 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC11.16□□□□□ -0.62
CUX1P39880 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
CUX1P39880 ANKRD30A-205ENST00000611781 4474 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
CUX1P39880 NFASC-204ENST00000401399 10205 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CUX1P39880 MTMR3-205ENST00000406629 3758 ntTSL 5 BASIC11.16□□□□□ -0.62
CUX1P39880 AC034111.1-201ENST00000562143 3770 ntBASIC11.16□□□□□ -0.62
CUX1P39880 OR52B5P-204ENST00000641744 3467 ntBASIC11.16□□□□□ -0.62
CUX1P39880 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CUX1P39880 CRNKL1-207ENST00000536226 4009 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CUX1P39880 AQP4-AS1-201ENST00000568797 3119 ntTSL 2 BASIC11.15□□□□□ -0.62
CUX1P39880 MEGF10-201ENST00000274473 7594 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 ABCB4-202ENST00000358400 3826 ntTSL 5 BASIC11.15□□□□□ -0.62
CUX1P39880 C1orf162-202ENST00000369718 915 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
CUX1P39880 SNORA51.9-201ENST00000384295 124 ntBASIC11.15□□□□□ -0.62
CUX1P39880 AC004386.1-201ENST00000393214 761 ntBASIC11.15□□□□□ -0.62
CUX1P39880 RPL31-202ENST00000409000 641 ntTSL 2 BASIC11.15□□□□□ -0.62
CUX1P39880 AC094019.1-201ENST00000434678 472 ntBASIC11.15□□□□□ -0.62
CUX1P39880 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC11.15□□□□□ -0.62
CUX1P39880 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC11.15□□□□□ -0.62
CUX1P39880 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC11.15□□□□□ -0.62
CUX1P39880 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC11.15□□□□□ -0.62
CUX1P39880 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 TRIM6-201ENST00000278302 3217 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 TEKT1-201ENST00000338694 3421 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 ZNF320-201ENST00000391781 6074 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 DROSHA-201ENST00000344624 5102 ntAPPRIS P4 TSL 5 BASIC11.15□□□□□ -0.62
CUX1P39880 SLA-201ENST00000338087 3451 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 GPM6B-205ENST00000454189 3957 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 STK4-202ENST00000372806 6342 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 TDRKH-201ENST00000368822 3093 ntAPPRIS P2 TSL 5 BASIC11.15□□□□□ -0.62
CUX1P39880 FLJ21408-201ENST00000499939 2594 ntTSL 2 BASIC11.15□□□□□ -0.62
CUX1P39880 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC11.15□□□□□ -0.62
CUX1P39880 LIMCH1-202ENST00000381753 5705 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CUX1P39880 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
CUX1P39880 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CUX1P39880 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
CUX1P39880 RN7SKP271-201ENST00000410528 320 ntBASIC11.14□□□□□ -0.63
CUX1P39880 RPS3P2-201ENST00000421346 701 ntBASIC11.14□□□□□ -0.63
CUX1P39880 AC112492.2-201ENST00000432774 1030 ntBASIC11.14□□□□□ -0.63
CUX1P39880 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC11.14□□□□□ -0.63
CUX1P39880 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC11.14□□□□□ -0.63
CUX1P39880 AC025458.1-201ENST00000506046 166 ntBASIC11.14□□□□□ -0.63
CUX1P39880 PVT1-214ENST00000522875 922 ntTSL 5 BASIC11.14□□□□□ -0.63
CUX1P39880 AL353626.1-201ENST00000613429 507 ntTSL 5 BASIC11.14□□□□□ -0.63
CUX1P39880 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CUX1P39880 MIR6811-201ENST00000620409 58 ntBASIC11.14□□□□□ -0.63
CUX1P39880 FO681491.1-202ENST00000623392 737 ntBASIC11.14□□□□□ -0.63
CUX1P39880 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC11.14□□□□□ -0.63
CUX1P39880 CD101-202ENST00000369470 3324 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CUX1P39880 AC007406.5-201ENST00000570140 3170 ntBASIC11.14□□□□□ -0.63
CUX1P39880 SLC9B1P1-201ENST00000331172 1337 ntBASIC11.14□□□□□ -0.63
CUX1P39880 AC107884.1-207ENST00000504206 4433 ntTSL 3 BASIC11.14□□□□□ -0.63
CUX1P39880 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC11.14□□□□□ -0.63
CUX1P39880 SH3GLB1-205ENST00000616170 6456 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CUX1P39880 FRMPD2-201ENST00000305531 4665 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
CUX1P39880 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
CUX1P39880 GPR107-202ENST00000372406 7353 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CUX1P39880 LTBP1-201ENST00000402934 4948 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
CUX1P39880 NFAT5-208ENST00000566899 4914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CUX1P39880 AC009108.3-201ENST00000602739 3515 ntBASIC11.14□□□□□ -0.63
CUX1P39880 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
CUX1P39880 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CUX1P39880 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC11.14□□□□□ -0.63
CUX1P39880 AC245047.5-201ENST00000437312 556 ntBASIC11.14□□□□□ -0.63
CUX1P39880 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC11.14□□□□□ -0.63
CUX1P39880 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC11.14□□□□□ -0.63
CUX1P39880 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC11.14□□□□□ -0.63
CUX1P39880 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC11.14□□□□□ -0.63
CUX1P39880 AC060775.1-201ENST00000518241 520 ntBASIC11.14□□□□□ -0.63
CUX1P39880 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CUX1P39880 AC008055.1-201ENST00000547032 609 ntBASIC11.14□□□□□ -0.63
CUX1P39880 AC016144.1-201ENST00000548175 1087 ntBASIC11.14□□□□□ -0.63
CUX1P39880 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC11.14□□□□□ -0.63
CUX1P39880 AC119501.1-201ENST00000603646 475 ntBASIC11.14□□□□□ -0.63
CUX1P39880 DICER1-204ENST00000527414 6179 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CUX1P39880 VRK2-203ENST00000417641 2381 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
CUX1P39880 ZIM3-201ENST00000269834 2627 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CUX1P39880 ARMCX5-206ENST00000604957 4640 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
CUX1P39880 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC11.13□□□□□ -0.63
CUX1P39880 AC083806.2-201ENST00000617795 2685 ntBASIC11.13□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms