Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC090213.1-201ENST00000586841 546 ntTSL 4 BASIC7.89□□□□□ -1.15
MSX1P28360 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC7.89□□□□□ -1.15
MSX1P28360 AC003002.3-201ENST00000597410 521 ntAPPRIS P1 TSL 3 BASIC7.89□□□□□ -1.15
MSX1P28360 AC233702.11-201ENST00000598588 333 ntBASIC7.89□□□□□ -1.15
MSX1P28360 CARSP1-201ENST00000603171 889 ntBASIC7.89□□□□□ -1.15
MSX1P28360 WBP1LP12-201ENST00000604449 331 ntBASIC7.89□□□□□ -1.15
MSX1P28360 RN7SL796P-201ENST00000613991 291 ntBASIC7.89□□□□□ -1.15
MSX1P28360 AC009704.2-201ENST00000618739 483 ntBASIC7.89□□□□□ -1.15
MSX1P28360 KCNQ1OT1_2.1-201ENST00000619507 196 ntBASIC7.89□□□□□ -1.15
MSX1P28360 AC109454.4-201ENST00000623411 649 ntBASIC7.89□□□□□ -1.15
MSX1P28360 ANKMY2-205ENST00000627859 210 ntTSL 5 BASIC7.89□□□□□ -1.15
MSX1P28360 LINC01778-208ENST00000635288 1095 ntTSL 5 BASIC7.89□□□□□ -1.15
MSX1P28360 OR5H6-203ENST00000642105 978 ntBASIC7.89□□□□□ -1.15
MSX1P28360 ZNF791-201ENST00000343325 4554 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 PRNT-203ENST00000423718 2096 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 SIPA1L1-211ENST00000555818 7831 ntAPPRIS P3 TSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 STAT4-201ENST00000358470 2769 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 SOX5-210ENST00000537393 2769 ntTSL 5 BASIC7.89□□□□□ -1.15
MSX1P28360 SCAND2P-201ENST00000348993 8975 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 OPTN-202ENST00000378747 3400 ntAPPRIS P2 TSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 NHSL2-208ENST00000639939 3402 ntTSL 5 BASIC7.89□□□□□ -1.15
MSX1P28360 LPIN1-202ENST00000396097 5690 ntTSL 5 BASIC7.89□□□□□ -1.15
MSX1P28360 GOLGA6L1-201ENST00000614055 2620 ntAPPRIS P1 TSL 5 BASIC7.89□□□□□ -1.15
MSX1P28360 FAM74A4-203ENST00000621724 1862 ntTSL 2 BASIC7.89□□□□□ -1.15
MSX1P28360 TTC23-203ENST00000394132 3849 ntAPPRIS P2 TSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 AC008966.1-203ENST00000499459 3137 ntTSL 2 BASIC7.89□□□□□ -1.15
MSX1P28360 GTPBP10-202ENST00000257659 1740 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 MAP7D3-204ENST00000370663 4446 ntAPPRIS ALT2 TSL 2 BASIC7.89□□□□□ -1.15
MSX1P28360 AL731563.3-201ENST00000608005 3005 ntTSL 2 BASIC7.89□□□□□ -1.15
MSX1P28360 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC7.89□□□□□ -1.15
MSX1P28360 USP17L15-202ENST00000621432 1680 ntAPPRIS P2 TSL 5 BASIC7.89□□□□□ -1.15
MSX1P28360 POU6F2-201ENST00000403058 2335 ntTSL 5 BASIC7.89□□□□□ -1.15
MSX1P28360 CHD7-201ENST00000423902 11568 ntAPPRIS P1 TSL 5 BASIC7.89□□□□□ -1.15
MSX1P28360 ZNF702P-201ENST00000270443 2990 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 AMD1-202ENST00000368877 1605 ntTSL 2 BASIC7.89□□□□□ -1.15
MSX1P28360 AC008522.1-201ENST00000639479 2906 ntBASIC7.89□□□□□ -1.15
MSX1P28360 KIAA1524-201ENST00000295746 4075 ntAPPRIS P2 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 PPWD1-215ENST00000538977 2055 ntTSL 2 BASIC7.88□□□□□ -1.15
MSX1P28360 NR1I3-205ENST00000367983 1473 ntAPPRIS P3 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 LUZP1-202ENST00000314174 3715 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 LINC01291-201ENST00000377469 3662 ntTSL 2 BASIC7.88□□□□□ -1.15
MSX1P28360 IL31RA-203ENST00000359040 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 GBP7-201ENST00000294671 2454 ntAPPRIS P1 TSL 2 BASIC7.88□□□□□ -1.15
MSX1P28360 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC7.88□□□□□ -1.15
MSX1P28360 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC7.88□□□□□ -1.15
MSX1P28360 INTS4-211ENST00000535943 1382 ntTSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 HMCN2-206ENST00000624552 15610 ntAPPRIS P1 TSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 OR1F1-201ENST00000304646 942 ntAPPRIS P1 BASIC7.88□□□□□ -1.15
MSX1P28360 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC7.88□□□□□ -1.15
MSX1P28360 OR5E1P-201ENST00000305754 927 ntBASIC7.88□□□□□ -1.15
MSX1P28360 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 IL6STP1-201ENST00000346911 1020 ntBASIC7.88□□□□□ -1.15
MSX1P28360 SMIM7-201ENST00000358726 850 ntTSL 2 BASIC7.88□□□□□ -1.15
MSX1P28360 CRYGS-202ENST00000392499 1132 ntAPPRIS P1 TSL 2 BASIC7.88□□□□□ -1.15
MSX1P28360 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 TYMSP1-201ENST00000407851 869 ntBASIC7.88□□□□□ -1.15
MSX1P28360 AC138393.2-201ENST00000414742 246 ntBASIC7.88□□□□□ -1.15
MSX1P28360 AC007422.2-201ENST00000419809 167 ntTSL 3 BASIC7.88□□□□□ -1.15
MSX1P28360 AC009480.2-201ENST00000422916 432 ntBASIC7.88□□□□□ -1.15
MSX1P28360 FKBP1AP3-201ENST00000423650 319 ntBASIC7.88□□□□□ -1.15
MSX1P28360 AL022400.1-201ENST00000423946 935 ntBASIC7.88□□□□□ -1.15
MSX1P28360 ISX-AS1-201ENST00000427881 202 ntTSL 3 BASIC7.88□□□□□ -1.15
MSX1P28360 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 RPSAP8-201ENST00000429844 889 ntBASIC7.88□□□□□ -1.15
MSX1P28360 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 AC000111.3-201ENST00000433478 193 ntBASIC7.88□□□□□ -1.15
MSX1P28360 AL353653.1-202ENST00000435177 539 ntTSL 3 BASIC7.88□□□□□ -1.15
MSX1P28360 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC7.88□□□□□ -1.15
MSX1P28360 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 AL592182.2-201ENST00000442477 858 ntTSL 2 BASIC7.88□□□□□ -1.15
MSX1P28360 FAR2P3-205ENST00000447059 604 ntBASIC7.88□□□□□ -1.15
MSX1P28360 AL392003.2-201ENST00000451015 679 ntBASIC7.88□□□□□ -1.15
MSX1P28360 AC092634.4-203ENST00000451395 448 ntBASIC7.88□□□□□ -1.15
MSX1P28360 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC7.88□□□□□ -1.15
MSX1P28360 PPIAP28-201ENST00000458378 485 ntBASIC7.88□□□□□ -1.15
MSX1P28360 AL121769.1-201ENST00000469473 401 ntBASIC7.88□□□□□ -1.15
MSX1P28360 AC023424.2-201ENST00000493479 777 ntBASIC7.88□□□□□ -1.15
MSX1P28360 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 OSTC-204ENST00000512478 663 ntTSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC7.88□□□□□ -1.15
MSX1P28360 AP001207.1-201ENST00000524051 481 ntBASIC7.88□□□□□ -1.15
MSX1P28360 LINC00681-201ENST00000530150 504 ntTSL 2 BASIC7.88□□□□□ -1.15
MSX1P28360 PRB1-203ENST00000545626 710 ntAPPRIS ALT2 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 AC074029.1-201ENST00000552531 1044 ntBASIC7.88□□□□□ -1.15
MSX1P28360 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 FRG2HP-201ENST00000568807 832 ntBASIC7.88□□□□□ -1.15
MSX1P28360 AP005328.1-201ENST00000577719 681 ntTSL 3 BASIC7.88□□□□□ -1.15
MSX1P28360 AC011840.3-201ENST00000579378 280 ntTSL 3 BASIC7.88□□□□□ -1.15
MSX1P28360 LINC01927-201ENST00000582231 712 ntTSL 3 BASIC7.88□□□□□ -1.15
MSX1P28360 RN7SL246P-201ENST00000584467 296 ntBASIC7.88□□□□□ -1.15
MSX1P28360 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC7.88□□□□□ -1.15
MSX1P28360 AC243960.5-201ENST00000597858 255 ntBASIC7.88□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms