Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 BX119927.1-201ENST00000636596 1552 ntBASIC20.9■□□□□ 0.94
USP3Q9Y6I4 KRT16P6-202ENST00000425692 1426 ntBASIC20.9■□□□□ 0.94
USP3Q9Y6I4 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 AC099778.1-201ENST00000568593 1911 ntBASIC20.9■□□□□ 0.94
USP3Q9Y6I4 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP3Q9Y6I4 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
USP3Q9Y6I4 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP3Q9Y6I4 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
USP3Q9Y6I4 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.89■□□□□ 0.93
USP3Q9Y6I4 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.89■□□□□ 0.93
USP3Q9Y6I4 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP3Q9Y6I4 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.89■□□□□ 0.93
USP3Q9Y6I4 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.89■□□□□ 0.93
USP3Q9Y6I4 RPPH1-201ENST00000516869 333 ntBASIC20.89■□□□□ 0.93
USP3Q9Y6I4 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.89■□□□□ 0.93
USP3Q9Y6I4 AC142381.4-202ENST00000563973 229 ntBASIC20.89■□□□□ 0.93
USP3Q9Y6I4 AL359736.2-201ENST00000621992 437 ntBASIC20.89■□□□□ 0.93
USP3Q9Y6I4 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP3Q9Y6I4 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP3Q9Y6I4 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.89■□□□□ 0.93
USP3Q9Y6I4 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP3Q9Y6I4 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP3Q9Y6I4 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP3Q9Y6I4 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 AC133681.1-201ENST00000465482 601 ntBASIC20.87■□□□□ 0.93
USP3Q9Y6I4 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 C1QBPP2-201ENST00000528754 825 ntBASIC20.87■□□□□ 0.93
USP3Q9Y6I4 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP3Q9Y6I4 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 AL121906.2-201ENST00000621597 723 ntBASIC20.86■□□□□ 0.93
USP3Q9Y6I4 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms