Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC38.06■■■■□ 3.68
SHROOM4Q9ULL8 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC38.06■■■■□ 3.68
SHROOM4Q9ULL8 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC38.06■■■■□ 3.68
SHROOM4Q9ULL8 ISCU-203ENST00000431221 799 ntTSL 2 BASIC38.06■■■■□ 3.68
SHROOM4Q9ULL8 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC38.06■■■■□ 3.68
SHROOM4Q9ULL8 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC38.06■■■■□ 3.68
SHROOM4Q9ULL8 NMU-205ENST00000511469 756 ntTSL 3 BASIC38.06■■■■□ 3.68
SHROOM4Q9ULL8 AC010203.1-204ENST00000548782 407 ntBASIC38.06■■■■□ 3.68
SHROOM4Q9ULL8 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC38.06■■■■□ 3.68
SHROOM4Q9ULL8 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC38.06■■■■□ 3.68
SHROOM4Q9ULL8 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC38.06■■■■□ 3.68
SHROOM4Q9ULL8 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC38.06■■■■□ 3.68
SHROOM4Q9ULL8 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC38.06■■■■□ 3.68
SHROOM4Q9ULL8 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC38.05■■■■□ 3.68
SHROOM4Q9ULL8 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC38.05■■■■□ 3.68
SHROOM4Q9ULL8 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC38.05■■■■□ 3.68
SHROOM4Q9ULL8 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC38.05■■■■□ 3.68
SHROOM4Q9ULL8 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC38.05■■■■□ 3.68
SHROOM4Q9ULL8 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC38.05■■■■□ 3.68
SHROOM4Q9ULL8 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC38.05■■■■□ 3.68
SHROOM4Q9ULL8 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC38.05■■■■□ 3.68
SHROOM4Q9ULL8 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC38.05■■■■□ 3.68
SHROOM4Q9ULL8 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC38.04■■■■□ 3.68
SHROOM4Q9ULL8 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC38.04■■■■□ 3.68
SHROOM4Q9ULL8 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC38.04■■■■□ 3.68
SHROOM4Q9ULL8 AL121906.2-201ENST00000621597 723 ntBASIC38.04■■■■□ 3.68
SHROOM4Q9ULL8 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC38.04■■■■□ 3.68
SHROOM4Q9ULL8 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC38.04■■■■□ 3.68
SHROOM4Q9ULL8 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC38.03■■■■□ 3.68
SHROOM4Q9ULL8 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC38.03■■■■□ 3.68
SHROOM4Q9ULL8 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC38.03■■■■□ 3.68
SHROOM4Q9ULL8 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC38.03■■■■□ 3.68
SHROOM4Q9ULL8 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC38.03■■■■□ 3.68
SHROOM4Q9ULL8 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC38.03■■■■□ 3.68
SHROOM4Q9ULL8 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC38.03■■■■□ 3.68
SHROOM4Q9ULL8 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC38.03■■■■□ 3.68
SHROOM4Q9ULL8 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC38.03■■■■□ 3.68
SHROOM4Q9ULL8 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC38.03■■■■□ 3.68
SHROOM4Q9ULL8 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC38.03■■■■□ 3.68
SHROOM4Q9ULL8 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC38.03■■■■□ 3.68
SHROOM4Q9ULL8 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC38.03■■■■□ 3.68
SHROOM4Q9ULL8 AL121894.2-201ENST00000602977 491 ntBASIC38.03■■■■□ 3.68
SHROOM4Q9ULL8 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC38.03■■■■□ 3.68
SHROOM4Q9ULL8 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC38.02■■■■□ 3.68
SHROOM4Q9ULL8 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC38.02■■■■□ 3.68
SHROOM4Q9ULL8 NIFKP9-201ENST00000419265 221 ntBASIC38.02■■■■□ 3.68
SHROOM4Q9ULL8 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC38.02■■■■□ 3.68
SHROOM4Q9ULL8 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC38.01■■■■□ 3.68
SHROOM4Q9ULL8 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC38.01■■■■□ 3.67
SHROOM4Q9ULL8 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC38.01■■■■□ 3.67
SHROOM4Q9ULL8 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC38.01■■■■□ 3.67
SHROOM4Q9ULL8 AC026310.3-201ENST00000625186 2373 ntBASIC38.01■■■■□ 3.67
SHROOM4Q9ULL8 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC38■■■■□ 3.67
SHROOM4Q9ULL8 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC38■■■■□ 3.67
SHROOM4Q9ULL8 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC38■■■■□ 3.67
SHROOM4Q9ULL8 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC38■■■■□ 3.67
SHROOM4Q9ULL8 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC37.99■■■■□ 3.67
SHROOM4Q9ULL8 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC37.99■■■■□ 3.67
SHROOM4Q9ULL8 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC37.99■■■■□ 3.67
SHROOM4Q9ULL8 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC37.99■■■■□ 3.67
SHROOM4Q9ULL8 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC37.99■■■■□ 3.67
SHROOM4Q9ULL8 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC37.99■■■■□ 3.67
SHROOM4Q9ULL8 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC37.99■■■■□ 3.67
SHROOM4Q9ULL8 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC37.99■■■■□ 3.67
SHROOM4Q9ULL8 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC37.99■■■■□ 3.67
SHROOM4Q9ULL8 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC37.99■■■■□ 3.67
SHROOM4Q9ULL8 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC37.99■■■■□ 3.67
SHROOM4Q9ULL8 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC37.99■■■■□ 3.67
SHROOM4Q9ULL8 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC37.98■■■■□ 3.67
SHROOM4Q9ULL8 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC37.98■■■■□ 3.67
SHROOM4Q9ULL8 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC37.98■■■■□ 3.67
SHROOM4Q9ULL8 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC37.98■■■■□ 3.67
SHROOM4Q9ULL8 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC37.98■■■■□ 3.67
SHROOM4Q9ULL8 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC37.98■■■■□ 3.67
SHROOM4Q9ULL8 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC37.98■■■■□ 3.67
SHROOM4Q9ULL8 PTBP1P-201ENST00000554374 1601 ntBASIC37.97■■■■□ 3.67
SHROOM4Q9ULL8 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC37.97■■■■□ 3.67
SHROOM4Q9ULL8 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC37.97■■■■□ 3.67
SHROOM4Q9ULL8 CRYGFP-201ENST00000418459 633 ntBASIC37.97■■■■□ 3.67
SHROOM4Q9ULL8 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC37.97■■■■□ 3.67
SHROOM4Q9ULL8 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC37.97■■■■□ 3.67
SHROOM4Q9ULL8 AC063952.2-201ENST00000498792 1227 ntBASIC37.97■■■■□ 3.67
SHROOM4Q9ULL8 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC37.97■■■■□ 3.67
SHROOM4Q9ULL8 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC37.97■■■■□ 3.67
SHROOM4Q9ULL8 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC37.97■■■■□ 3.67
SHROOM4Q9ULL8 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC37.97■■■■□ 3.67
SHROOM4Q9ULL8 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC37.97■■■■□ 3.67
SHROOM4Q9ULL8 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC37.96■■■■□ 3.67
SHROOM4Q9ULL8 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC37.96■■■■□ 3.67
SHROOM4Q9ULL8 GUK1-204ENST00000366721 689 ntTSL 3 BASIC37.96■■■■□ 3.67
SHROOM4Q9ULL8 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC37.96■■■■□ 3.67
SHROOM4Q9ULL8 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC37.96■■■■□ 3.67
SHROOM4Q9ULL8 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC37.96■■■■□ 3.67
SHROOM4Q9ULL8 TPM4P1-201ENST00000436100 807 ntBASIC37.96■■■■□ 3.67
SHROOM4Q9ULL8 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC37.96■■■■□ 3.67
SHROOM4Q9ULL8 KRT126P-201ENST00000549467 1181 ntBASIC37.96■■■■□ 3.67
SHROOM4Q9ULL8 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC37.96■■■■□ 3.67
SHROOM4Q9ULL8 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC37.96■■■■□ 3.67
SHROOM4Q9ULL8 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC37.96■■■■□ 3.67
SHROOM4Q9ULL8 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC37.96■■■■□ 3.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms