Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.6■□□□□ 0.89
TDP1Q9NUW8 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TDP1Q9NUW8 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TDP1Q9NUW8 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TDP1Q9NUW8 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TDP1Q9NUW8 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.59■□□□□ 0.89
TDP1Q9NUW8 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TDP1Q9NUW8 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
TDP1Q9NUW8 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.59■□□□□ 0.89
TDP1Q9NUW8 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.59■□□□□ 0.89
TDP1Q9NUW8 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TDP1Q9NUW8 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TDP1Q9NUW8 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TDP1Q9NUW8 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TDP1Q9NUW8 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
TDP1Q9NUW8 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TDP1Q9NUW8 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TDP1Q9NUW8 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 NUDT16P1-203ENST00000513809 620 ntBASIC20.58■□□□□ 0.89
TDP1Q9NUW8 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 AC097493.4-201ENST00000641197 219 ntBASIC20.58■□□□□ 0.89
TDP1Q9NUW8 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TDP1Q9NUW8 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
TDP1Q9NUW8 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
TDP1Q9NUW8 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
TDP1Q9NUW8 AC092720.2-201ENST00000602388 1665 ntBASIC20.58■□□□□ 0.88
TDP1Q9NUW8 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 AC012306.2-201ENST00000609350 630 ntBASIC20.57■□□□□ 0.88
TDP1Q9NUW8 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
TDP1Q9NUW8 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
TDP1Q9NUW8 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TDP1Q9NUW8 KRT16P6-202ENST00000425692 1426 ntBASIC20.56■□□□□ 0.88
TDP1Q9NUW8 MMP23A-201ENST00000234610 1017 ntBASIC20.56■□□□□ 0.88
TDP1Q9NUW8 KSR1P1-201ENST00000446298 240 ntBASIC20.56■□□□□ 0.88
TDP1Q9NUW8 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.56■□□□□ 0.88
TDP1Q9NUW8 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TDP1Q9NUW8 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TDP1Q9NUW8 AP006587.1-201ENST00000534129 1502 ntBASIC20.56■□□□□ 0.88
TDP1Q9NUW8 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TDP1Q9NUW8 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.56■□□□□ 0.88
TDP1Q9NUW8 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TDP1Q9NUW8 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.56■□□□□ 0.88
TDP1Q9NUW8 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
TDP1Q9NUW8 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.56■□□□□ 0.88
TDP1Q9NUW8 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
TDP1Q9NUW8 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TDP1Q9NUW8 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
TDP1Q9NUW8 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TDP1Q9NUW8 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TDP1Q9NUW8 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.55■□□□□ 0.88
TDP1Q9NUW8 NIFKP9-201ENST00000419265 221 ntBASIC20.55■□□□□ 0.88
TDP1Q9NUW8 KRT18P21-201ENST00000515767 1272 ntBASIC20.55■□□□□ 0.88
TDP1Q9NUW8 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TDP1Q9NUW8 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.55■□□□□ 0.88
TDP1Q9NUW8 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.55■□□□□ 0.88
TDP1Q9NUW8 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.55■□□□□ 0.88
TDP1Q9NUW8 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
TDP1Q9NUW8 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.55■□□□□ 0.88
TDP1Q9NUW8 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.55■□□□□ 0.88
TDP1Q9NUW8 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TDP1Q9NUW8 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TDP1Q9NUW8 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TDP1Q9NUW8 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
TDP1Q9NUW8 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms