Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.34■■□□□ 1.01
PAAF1Q9BRP4 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.34■■□□□ 1.01
PAAF1Q9BRP4 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
PAAF1Q9BRP4 MIR4785-201ENST00000585005 73 ntBASIC21.34■■□□□ 1.01
PAAF1Q9BRP4 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.34■■□□□ 1.01
PAAF1Q9BRP4 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC21.34■■□□□ 1.01
PAAF1Q9BRP4 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC21.34■■□□□ 1.01
PAAF1Q9BRP4 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PAAF1Q9BRP4 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.34■■□□□ 1.01
PAAF1Q9BRP4 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
PAAF1Q9BRP4 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PAAF1Q9BRP4 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PAAF1Q9BRP4 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PAAF1Q9BRP4 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.34■■□□□ 1.01
PAAF1Q9BRP4 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.33■■□□□ 1.01
PAAF1Q9BRP4 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
PAAF1Q9BRP4 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1
PAAF1Q9BRP4 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.33■■□□□ 1
PAAF1Q9BRP4 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.32■■□□□ 1
PAAF1Q9BRP4 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PAAF1Q9BRP4 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.32■■□□□ 1
PAAF1Q9BRP4 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.32■■□□□ 1
PAAF1Q9BRP4 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
PAAF1Q9BRP4 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
PAAF1Q9BRP4 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.32■■□□□ 1
PAAF1Q9BRP4 FAM197Y1-201ENST00000421178 764 ntBASIC21.32■■□□□ 1
PAAF1Q9BRP4 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.32■■□□□ 1
PAAF1Q9BRP4 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.32■■□□□ 1
PAAF1Q9BRP4 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.32■■□□□ 1
PAAF1Q9BRP4 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.32■■□□□ 1
PAAF1Q9BRP4 RPS20-210ENST00000523936 899 ntTSL 2 BASIC21.32■■□□□ 1
PAAF1Q9BRP4 CD177P1-201ENST00000606252 935 ntBASIC21.32■■□□□ 1
PAAF1Q9BRP4 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.32■■□□□ 1
PAAF1Q9BRP4 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.32■■□□□ 1
PAAF1Q9BRP4 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.32■■□□□ 1
PAAF1Q9BRP4 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
PAAF1Q9BRP4 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.32■■□□□ 1
PAAF1Q9BRP4 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
PAAF1Q9BRP4 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PAAF1Q9BRP4 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC21.31■■□□□ 1
PAAF1Q9BRP4 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.31■■□□□ 1
PAAF1Q9BRP4 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.31■■□□□ 1
PAAF1Q9BRP4 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.31■■□□□ 1
PAAF1Q9BRP4 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.31■■□□□ 1
PAAF1Q9BRP4 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.31■■□□□ 1
PAAF1Q9BRP4 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
PAAF1Q9BRP4 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC21.31■■□□□ 1
PAAF1Q9BRP4 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC21.31■■□□□ 1
PAAF1Q9BRP4 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.31■■□□□ 1
PAAF1Q9BRP4 AC026471.5-201ENST00000615068 467 ntBASIC21.31■■□□□ 1
PAAF1Q9BRP4 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
PAAF1Q9BRP4 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.31■■□□□ 1
PAAF1Q9BRP4 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PAAF1Q9BRP4 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PAAF1Q9BRP4 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.3■■□□□ 1
PAAF1Q9BRP4 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PAAF1Q9BRP4 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC21.3■■□□□ 1
PAAF1Q9BRP4 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC21.3■■□□□ 1
PAAF1Q9BRP4 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.3■■□□□ 1
PAAF1Q9BRP4 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.3■■□□□ 1
PAAF1Q9BRP4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.3■■□□□ 1
PAAF1Q9BRP4 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC21.3■■□□□ 1
PAAF1Q9BRP4 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.3■■□□□ 1
PAAF1Q9BRP4 AP003071.4-201ENST00000562276 1284 ntBASIC21.3■■□□□ 1
PAAF1Q9BRP4 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PAAF1Q9BRP4 AC004264.1-201ENST00000608354 794 ntBASIC21.3■■□□□ 1
PAAF1Q9BRP4 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC21.3■■□□□ 1
PAAF1Q9BRP4 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
PAAF1Q9BRP4 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.3■■□□□ 1
PAAF1Q9BRP4 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
PAAF1Q9BRP4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PAAF1Q9BRP4 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.29■■□□□ 1
PAAF1Q9BRP4 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.29■■□□□ 1
PAAF1Q9BRP4 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PAAF1Q9BRP4 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.29■■□□□ 1
PAAF1Q9BRP4 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
PAAF1Q9BRP4 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PAAF1Q9BRP4 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.29■■□□□ 1
PAAF1Q9BRP4 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms