Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
VPS50Q96JG6 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS50Q96JG6 AC010980.2-201ENST00000587099 1412 ntBASIC19.42■□□□□ 0.7
VPS50Q96JG6 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS50Q96JG6 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS50Q96JG6 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS50Q96JG6 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS50Q96JG6 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS50Q96JG6 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS50Q96JG6 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.42■□□□□ 0.7
VPS50Q96JG6 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS50Q96JG6 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS50Q96JG6 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS50Q96JG6 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS50Q96JG6 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS50Q96JG6 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS50Q96JG6 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
VPS50Q96JG6 AC093787.1-201ENST00000450396 207 ntBASIC19.42■□□□□ 0.7
VPS50Q96JG6 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS50Q96JG6 FAM201B-201ENST00000458407 597 ntBASIC19.42■□□□□ 0.7
VPS50Q96JG6 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.42■□□□□ 0.7
VPS50Q96JG6 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS50Q96JG6 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.42■□□□□ 0.7
VPS50Q96JG6 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VPS50Q96JG6 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS50Q96JG6 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS50Q96JG6 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
VPS50Q96JG6 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS50Q96JG6 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS50Q96JG6 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS50Q96JG6 LETM1P2-201ENST00000597330 2178 ntBASIC19.42■□□□□ 0.7
VPS50Q96JG6 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS50Q96JG6 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS50Q96JG6 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS50Q96JG6 AL512408.1-201ENST00000569378 2000 ntBASIC19.41■□□□□ 0.7
VPS50Q96JG6 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS50Q96JG6 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS50Q96JG6 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
VPS50Q96JG6 LSM12P1-201ENST00000411836 588 ntBASIC19.41■□□□□ 0.7
VPS50Q96JG6 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS50Q96JG6 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS50Q96JG6 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS50Q96JG6 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS50Q96JG6 TMEM191A-211ENST00000637163 1067 ntBASIC19.41■□□□□ 0.7
VPS50Q96JG6 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS50Q96JG6 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS50Q96JG6 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS50Q96JG6 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS50Q96JG6 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS50Q96JG6 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS50Q96JG6 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.4■□□□□ 0.7
VPS50Q96JG6 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
VPS50Q96JG6 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS50Q96JG6 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
VPS50Q96JG6 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
VPS50Q96JG6 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
VPS50Q96JG6 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS50Q96JG6 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
VPS50Q96JG6 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VPS50Q96JG6 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.7
VPS50Q96JG6 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS50Q96JG6 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS50Q96JG6 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS50Q96JG6 ABHD17AP1-201ENST00000358206 933 ntBASIC19.39■□□□□ 0.69
VPS50Q96JG6 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.39■□□□□ 0.69
VPS50Q96JG6 AC091799.1-201ENST00000422823 811 ntBASIC19.39■□□□□ 0.69
VPS50Q96JG6 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS50Q96JG6 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
VPS50Q96JG6 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS50Q96JG6 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS50Q96JG6 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS50Q96JG6 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS50Q96JG6 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
VPS50Q96JG6 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS50Q96JG6 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS50Q96JG6 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS50Q96JG6 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS50Q96JG6 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS50Q96JG6 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
VPS50Q96JG6 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS50Q96JG6 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
VPS50Q96JG6 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms