Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NKX2-3Q8TAU0 AC099778.1-201ENST00000568593 1911 ntBASIC23.69■■□□□ 1.38
NKX2-3Q8TAU0 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 REXO2-208ENST00000539754 791 ntTSL 2 BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 AP001412.1-201ENST00000608405 714 ntBASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC23.68■■□□□ 1.38
NKX2-3Q8TAU0 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
NKX2-3Q8TAU0 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
NKX2-3Q8TAU0 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC23.67■■□□□ 1.38
NKX2-3Q8TAU0 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC23.67■■□□□ 1.38
NKX2-3Q8TAU0 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
NKX2-3Q8TAU0 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
NKX2-3Q8TAU0 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC23.67■■□□□ 1.38
NKX2-3Q8TAU0 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC23.67■■□□□ 1.38
NKX2-3Q8TAU0 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC23.67■■□□□ 1.38
NKX2-3Q8TAU0 AC069544.1-201ENST00000609399 999 ntBASIC23.67■■□□□ 1.38
NKX2-3Q8TAU0 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
NKX2-3Q8TAU0 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC23.67■■□□□ 1.38
NKX2-3Q8TAU0 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC23.67■■□□□ 1.38
NKX2-3Q8TAU0 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
NKX2-3Q8TAU0 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC23.67■■□□□ 1.38
NKX2-3Q8TAU0 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
NKX2-3Q8TAU0 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 RPS2P55-201ENST00000397318 883 ntBASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 AC107956.1-201ENST00000494359 873 ntBASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.66■■□□□ 1.38
NKX2-3Q8TAU0 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NKX2-3Q8TAU0 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC23.65■■□□□ 1.38
NKX2-3Q8TAU0 AC073130.3-201ENST00000624389 2278 ntBASIC23.65■■□□□ 1.38
NKX2-3Q8TAU0 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NKX2-3Q8TAU0 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NKX2-3Q8TAU0 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC23.65■■□□□ 1.38
NKX2-3Q8TAU0 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NKX2-3Q8TAU0 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NKX2-3Q8TAU0 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC23.65■■□□□ 1.38
NKX2-3Q8TAU0 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NKX2-3Q8TAU0 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC23.65■■□□□ 1.38
NKX2-3Q8TAU0 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC23.65■■□□□ 1.38
NKX2-3Q8TAU0 PCDHAC2-203ENST00000615316 3011 ntBASIC23.65■■□□□ 1.38
NKX2-3Q8TAU0 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC23.64■■□□□ 1.38
NKX2-3Q8TAU0 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC23.64■■□□□ 1.38
NKX2-3Q8TAU0 USP39-204ENST00000409766 2033 ntTSL 2 BASIC23.64■■□□□ 1.38
NKX2-3Q8TAU0 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC23.64■■□□□ 1.38
NKX2-3Q8TAU0 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
NKX2-3Q8TAU0 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC23.64■■□□□ 1.38
NKX2-3Q8TAU0 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC23.64■■□□□ 1.37
NKX2-3Q8TAU0 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NKX2-3Q8TAU0 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
NKX2-3Q8TAU0 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
NKX2-3Q8TAU0 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC23.64■■□□□ 1.37
NKX2-3Q8TAU0 OR2A1-AS1-207ENST00000486094 819 ntBASIC23.64■■□□□ 1.37
NKX2-3Q8TAU0 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NKX2-3Q8TAU0 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
NKX2-3Q8TAU0 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
NKX2-3Q8TAU0 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC23.64■■□□□ 1.37
NKX2-3Q8TAU0 AC097493.4-201ENST00000641197 219 ntBASIC23.64■■□□□ 1.37
NKX2-3Q8TAU0 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC23.64■■□□□ 1.37
NKX2-3Q8TAU0 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
NKX2-3Q8TAU0 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NKX2-3Q8TAU0 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC23.64■■□□□ 1.37
NKX2-3Q8TAU0 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NKX2-3Q8TAU0 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
NKX2-3Q8TAU0 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NKX2-3Q8TAU0 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
NKX2-3Q8TAU0 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NKX2-3Q8TAU0 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms