Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP39Q53GS9 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP39Q53GS9 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.28■□□□□ 0.84
USP39Q53GS9 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP39Q53GS9 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
USP39Q53GS9 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP39Q53GS9 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
USP39Q53GS9 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP39Q53GS9 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP39Q53GS9 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP39Q53GS9 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP39Q53GS9 AL353807.1-201ENST00000427475 662 ntBASIC20.27■□□□□ 0.84
USP39Q53GS9 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
USP39Q53GS9 AF186192.3-201ENST00000583427 947 ntBASIC20.27■□□□□ 0.84
USP39Q53GS9 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP39Q53GS9 CD177P1-201ENST00000606252 935 ntBASIC20.27■□□□□ 0.84
USP39Q53GS9 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.27■□□□□ 0.84
USP39Q53GS9 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.27■□□□□ 0.84
USP39Q53GS9 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
USP39Q53GS9 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
USP39Q53GS9 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
USP39Q53GS9 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
USP39Q53GS9 HTR7P1-201ENST00000538670 1336 ntBASIC20.27■□□□□ 0.83
USP39Q53GS9 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP39Q53GS9 MMP23A-201ENST00000234610 1017 ntBASIC20.26■□□□□ 0.83
USP39Q53GS9 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.26■□□□□ 0.83
USP39Q53GS9 KRT16P5-201ENST00000455284 522 ntBASIC20.26■□□□□ 0.83
USP39Q53GS9 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.26■□□□□ 0.83
USP39Q53GS9 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.26■□□□□ 0.83
USP39Q53GS9 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.26■□□□□ 0.83
USP39Q53GS9 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP39Q53GS9 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP39Q53GS9 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP39Q53GS9 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP39Q53GS9 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
USP39Q53GS9 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP39Q53GS9 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP39Q53GS9 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP39Q53GS9 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP39Q53GS9 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP39Q53GS9 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP39Q53GS9 TMPOP1-202ENST00000424642 1267 ntBASIC20.25■□□□□ 0.83
USP39Q53GS9 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.25■□□□□ 0.83
USP39Q53GS9 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.25■□□□□ 0.83
USP39Q53GS9 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP39Q53GS9 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP39Q53GS9 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP39Q53GS9 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP39Q53GS9 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
USP39Q53GS9 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP39Q53GS9 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.25■□□□□ 0.83
USP39Q53GS9 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP39Q53GS9 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.25■□□□□ 0.83
USP39Q53GS9 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.25■□□□□ 0.83
USP39Q53GS9 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP39Q53GS9 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP39Q53GS9 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP39Q53GS9 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP39Q53GS9 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP39Q53GS9 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP39Q53GS9 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP39Q53GS9 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.24■□□□□ 0.83
USP39Q53GS9 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.24■□□□□ 0.83
USP39Q53GS9 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP39Q53GS9 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.24■□□□□ 0.83
USP39Q53GS9 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP39Q53GS9 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.24■□□□□ 0.83
USP39Q53GS9 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.24■□□□□ 0.83
USP39Q53GS9 AL353708.3-201ENST00000610272 989 ntBASIC20.24■□□□□ 0.83
USP39Q53GS9 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.24■□□□□ 0.83
USP39Q53GS9 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.24■□□□□ 0.83
USP39Q53GS9 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP39Q53GS9 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP39Q53GS9 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP39Q53GS9 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
USP39Q53GS9 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
USP39Q53GS9 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.23■□□□□ 0.83
USP39Q53GS9 AL049796.1-201ENST00000565336 1766 ntBASIC20.23■□□□□ 0.83
USP39Q53GS9 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP39Q53GS9 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.23■□□□□ 0.83
USP39Q53GS9 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.23■□□□□ 0.83
USP39Q53GS9 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP39Q53GS9 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP39Q53GS9 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
USP39Q53GS9 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.23■□□□□ 0.83
USP39Q53GS9 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP39Q53GS9 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP39Q53GS9 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.23■□□□□ 0.83
USP39Q53GS9 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.23■□□□□ 0.83
USP39Q53GS9 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.23■□□□□ 0.83
USP39Q53GS9 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.23■□□□□ 0.83
USP39Q53GS9 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.23■□□□□ 0.83
USP39Q53GS9 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
USP39Q53GS9 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
USP39Q53GS9 NBPF21P-201ENST00000425093 1451 ntBASIC20.23■□□□□ 0.83
USP39Q53GS9 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP39Q53GS9 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.23■□□□□ 0.83
USP39Q53GS9 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP39Q53GS9 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP39Q53GS9 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms