Protein–RNA interactions for Protein: Q05919

VPS38, Vacuolar protein sorting-associated protein 38, yeastyeast

Predictions only

Length 439 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS38Q05919 YOL013W-AYOL013W-A 192 nt0.28□□□□□ -2.36
VPS38Q05919 YOL014WYOL014W 375 nt0.28□□□□□ -2.36
VPS38Q05919 YOR102WYOR102W 351 nt0.28□□□□□ -2.36
VPS38Q05919 snR39BsnR39B 96 nt0.27□□□□□ -2.37
VPS38Q05919 ESP1YGR098C 4893 nt0.26□□□□□ -2.37
VPS38Q05919 YLR466C-BYLR466C-B 117 nt0.26□□□□□ -2.37
VPS38Q05919 YBR099CYBR099C 384 nt0.26□□□□□ -2.37
VPS38Q05919 YNL054W-BYNL054W-B 5250 nt0.24□□□□□ -2.37
VPS38Q05919 YGR151CYGR151C 336 nt0.24□□□□□ -2.37
VPS38Q05919 tL(UAA)QtL(UAA)Q 85 nt0.23□□□□□ -2.37
VPS38Q05919 YDL007C-AYDL007C-A 258 nt0.22□□□□□ -2.37
VPS38Q05919 YGR146C-AYGR146C-A 162 nt0.22□□□□□ -2.37
VPS38Q05919 YNL198CYNL198C 303 nt0.21□□□□□ -2.38
VPS38Q05919 YPL060C-AYPL060C-A 3315 nt0.2□□□□□ -2.38
VPS38Q05919 MYO1YHR023W 5787 nt0.19□□□□□ -2.38
VPS38Q05919 YNL067W-BYNL067W-B 141 nt0.17□□□□□ -2.38
VPS38Q05919 EST1YLR233C 2100 nt0.16□□□□□ -2.38
VPS38Q05919 SOV1YMR066W 2697 nt0.15□□□□□ -2.39
VPS38Q05919 Q0032Q0032 291 nt0.13□□□□□ -2.39
VPS38Q05919 YBL053WYBL053W 375 nt0.13□□□□□ -2.39
VPS38Q05919 YJL077W-AYJL077W-A 87 nt0.12□□□□□ -2.39
VPS38Q05919 YNL338WYNL338W 159 nt0.12□□□□□ -2.39
VPS38Q05919 YNL205CYNL205C 423 nt0.08□□□□□ -2.4
VPS38Q05919 snR69snR69 101 nt0.07□□□□□ -2.4
VPS38Q05919 YGL007C-AYGL007C-A 87 nt0.07□□□□□ -2.4
VPS38Q05919 PMP2YEL017C-A 132 nt0.06□□□□□ -2.4
VPS38Q05919 YER078W-AYER078W-A 165 nt0.06□□□□□ -2.4
VPS38Q05919 snR128snR128 126 nt0.04□□□□□ -2.4
VPS38Q05919 tQ(UUG)QtQ(UUG)Q 76 nt0.01□□□□□ -2.41
VPS38Q05919 YGR164WYGR164W 336 nt0□□□□□ -2.41
VPS38Q05919 RDS3YPR094W 324 nt-0.01□□□□□ -2.41
VPS38Q05919 SEC10YLR166C 2616 nt-0.02□□□□□ -2.41
VPS38Q05919 THO2YNL139C 4794 nt-0.03□□□□□ -2.41
VPS38Q05919 SOM1YEL059C-A 225 nt-0.05□□□□□ -2.42
VPS38Q05919 tD(GUC)QtD(GUC)Q 75 nt-0.06□□□□□ -2.42
VPS38Q05919 YCR095W-AYCR095W-A 159 nt-0.07□□□□□ -2.42
VPS38Q05919 snR45snR45 172 nt-0.07□□□□□ -2.42
VPS38Q05919 YOR225WYOR225W 330 nt-0.08□□□□□ -2.42
VPS38Q05919 YNL266WYNL266W 420 nt-0.1□□□□□ -2.43
VPS38Q05919 YBR178WYBR178W 375 nt-0.11□□□□□ -2.43
VPS38Q05919 YER090C-AYER090C-A 90 nt-0.13□□□□□ -2.43
VPS38Q05919 YLR294CYLR294C 330 nt-0.14□□□□□ -2.43
VPS38Q05919 YLR286W-AYLR286W-A 135 nt-0.15□□□□□ -2.43
VPS38Q05919 YBR196C-AYBR196C-A 150 nt-0.15□□□□□ -2.43
VPS38Q05919 YML100W-AYML100W-A 174 nt-0.17□□□□□ -2.44
VPS38Q05919 YDL159C-BYDL159C-B 177 nt-0.18□□□□□ -2.44
VPS38Q05919 snR50snR50 90 nt-0.18□□□□□ -2.44
VPS38Q05919 YIL071W-AYIL071W-A 477 nt-0.19□□□□□ -2.44
VPS38Q05919 YCL001W-BYCL001W-B 255 nt-0.19□□□□□ -2.44
VPS38Q05919 SBH2YER019C-A 267 nt-0.24□□□□□ -2.45
VPS38Q05919 YLR299C-AYLR299C-A 93 nt-0.27□□□□□ -2.45
VPS38Q05919 snR67snR67 82 nt-0.32□□□□□ -2.46
VPS38Q05919 TFB5YDR079C-A 219 nt-0.32□□□□□ -2.46
VPS38Q05919 PAU9YBL108C-A 129 nt-0.33□□□□□ -2.46
VPS38Q05919 tA(UGC)QtA(UGC)Q 76 nt-0.4□□□□□ -2.47
VPS38Q05919 YNL170WYNL170W 396 nt-0.43□□□□□ -2.48
VPS38Q05919 YML054C-AYML054C-A 159 nt-0.48□□□□□ -2.49
VPS38Q05919 YHR180C-BYHR180C-B 105 nt-0.5□□□□□ -2.49
VPS38Q05919 ATP8Q0080 147 nt-0.51□□□□□ -2.49
VPS38Q05919 YOL083C-AYOL083C-A 141 nt-0.51□□□□□ -2.49
VPS38Q05919 SKI7YOR076C 2244 nt-0.53□□□□□ -2.49
VPS38Q05919 YAL037C-AYAL037C-A 93 nt-0.55□□□□□ -2.5
VPS38Q05919 YJL113WYJL113W 4647 nt-0.56□□□□□ -2.5
VPS38Q05919 YBL071C-BYBL071C-B 99 nt-0.57□□□□□ -2.5
VPS38Q05919 URB1YKL014C 5295 nt-0.62□□□□□ -2.51
VPS38Q05919 snR81snR81 201 nt-0.63□□□□□ -2.51
VPS38Q05919 YOL164W-AYOL164W-A 183 nt-0.65□□□□□ -2.51
VPS38Q05919 YHL009W-BYHL009W-B 5409 nt-0.66□□□□□ -2.52
VPS38Q05919 snR61snR61 90 nt-0.68□□□□□ -2.52
VPS38Q05919 Q0092Q0092 141 nt-0.68□□□□□ -2.52
VPS38Q05919 YNL103W-AYNL103W-A 90 nt-0.68□□□□□ -2.52
VPS38Q05919 YBL100W-CYBL100W-C 120 nt-0.68□□□□□ -2.52
VPS38Q05919 RPL41AYDL184C 78 nt-0.72□□□□□ -2.52
VPS38Q05919 YGL041C-BYGL041C-B 183 nt-0.72□□□□□ -2.52
VPS38Q05919 YBR296C-AYBR296C-A 120 nt-0.72□□□□□ -2.52
VPS38Q05919 snR161snR161 161 nt-0.74□□□□□ -2.53
VPS38Q05919 YBR109W-AYBR109W-A 225 nt-0.74□□□□□ -2.53
VPS38Q05919 YGR240C-AYGR240C-A 201 nt-0.76□□□□□ -2.53
VPS38Q05919 snR47snR47 99 nt-0.76□□□□□ -2.53
VPS38Q05919 snR33snR33 183 nt-0.82□□□□□ -2.54
VPS38Q05919 tT(UGU)G1tT(UGU)G1 72 nt-0.85□□□□□ -2.55
VPS38Q05919 tT(UGU)G2tT(UGU)G2 72 nt-0.85□□□□□ -2.55
VPS38Q05919 tT(UGU)PtT(UGU)P 72 nt-0.85□□□□□ -2.55
VPS38Q05919 snR38snR38 95 nt-0.88□□□□□ -2.55
VPS38Q05919 YKL106C-AYKL106C-A 120 nt-0.89□□□□□ -2.55
VPS38Q05919 YOR376W-AYOR376W-A 156 nt-0.9□□□□□ -2.55
VPS38Q05919 Q0143Q0143 153 nt-0.91□□□□□ -2.56
VPS38Q05919 tS(GCU)Q1tS(GCU)Q1 86 nt-0.97□□□□□ -2.56
VPS38Q05919 snR62snR62 100 nt-1□□□□□ -2.57
VPS38Q05919 YOR316C-AYOR316C-A 210 nt-1.01□□□□□ -2.57
VPS38Q05919 YDR034C-AYDR034C-A 177 nt-1.03□□□□□ -2.57
VPS38Q05919 YKL225WYKL225W 348 nt-1.03□□□□□ -2.57
VPS38Q05919 YMR326CYMR326C 309 nt-1.08□□□□□ -2.58
VPS38Q05919 snR85snR85 171 nt-1.14□□□□□ -2.59
VPS38Q05919 YHR217CYHR217C 462 nt-1.15□□□□□ -2.59
VPS38Q05919 tP(UGG)QtP(UGG)Q 72 nt-1.18□□□□□ -2.6
VPS38Q05919 snR77snR77 88 nt-1.19□□□□□ -2.6
VPS38Q05919 CDC65tQ(CUG)M 72 nt-1.19□□□□□ -2.6
VPS38Q05919 YBR223W-AYBR223W-A 120 nt-1.24□□□□□ -2.61
VPS38Q05919 snR64snR64 101 nt-1.32□□□□□ -2.62
Retrieved 100 of 7,029 protein–RNA pairs in 139.2 ms