Protein–RNA interactions for Protein: Q02260

SMD1, Small nuclear ribonucleoprotein Sm D1, yeastyeast

Predicted RBP Predictions only

Length 146 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SMD1Q02260 tF(GAA)P1tF(GAA)P1 73 nt0.05□□□□□ -2.4
SMD1Q02260 tF(GAA)P2tF(GAA)P2 73 nt0.05□□□□□ -2.4
SMD1Q02260 SOV1YMR066W 2697 nt0.04□□□□□ -2.4
SMD1Q02260 tM(CAU)Q1tM(CAU)Q1 76 nt0.04□□□□□ -2.4
SMD1Q02260 YHL015W-AYHL015W-A 84 nt0.03□□□□□ -2.4
SMD1Q02260 snR48snR48 113 nt0.03□□□□□ -2.4
SMD1Q02260 tL(UAA)QtL(UAA)Q 85 nt0.01□□□□□ -2.41
SMD1Q02260 YOR102WYOR102W 351 nt0.01□□□□□ -2.41
SMD1Q02260 YGR146C-AYGR146C-A 162 nt0□□□□□ -2.41
SMD1Q02260 snR128snR128 126 nt0□□□□□ -2.41
SMD1Q02260 YNL198CYNL198C 303 nt-0.02□□□□□ -2.41
SMD1Q02260 YDL007C-AYDL007C-A 258 nt-0.03□□□□□ -2.41
SMD1Q02260 YOL014WYOL014W 375 nt-0.03□□□□□ -2.41
SMD1Q02260 YNL067W-BYNL067W-B 141 nt-0.04□□□□□ -2.42
SMD1Q02260 THO2YNL139C 4794 nt-0.05□□□□□ -2.42
SMD1Q02260 RPM2YML091C 3609 nt-0.05□□□□□ -2.42
SMD1Q02260 YBL053WYBL053W 375 nt-0.05□□□□□ -2.42
SMD1Q02260 snR69snR69 101 nt-0.06□□□□□ -2.42
SMD1Q02260 YGR164WYGR164W 336 nt-0.06□□□□□ -2.42
SMD1Q02260 tQ(UUG)QtQ(UUG)Q 76 nt-0.07□□□□□ -2.42
SMD1Q02260 YJL077W-AYJL077W-A 87 nt-0.07□□□□□ -2.42
SMD1Q02260 PMP2YEL017C-A 132 nt-0.09□□□□□ -2.42
SMD1Q02260 YLR466C-BYLR466C-B 117 nt-0.09□□□□□ -2.42
SMD1Q02260 YER078W-AYER078W-A 165 nt-0.12□□□□□ -2.43
SMD1Q02260 YNL205CYNL205C 423 nt-0.12□□□□□ -2.43
SMD1Q02260 YPL060C-AYPL060C-A 3315 nt-0.13□□□□□ -2.43
SMD1Q02260 YGR151CYGR151C 336 nt-0.13□□□□□ -2.43
SMD1Q02260 RDS3YPR094W 324 nt-0.15□□□□□ -2.43
SMD1Q02260 SEC10YLR166C 2616 nt-0.17□□□□□ -2.44
SMD1Q02260 YNL338WYNL338W 159 nt-0.17□□□□□ -2.44
SMD1Q02260 snR45snR45 172 nt-0.17□□□□□ -2.44
SMD1Q02260 tD(GUC)QtD(GUC)Q 75 nt-0.18□□□□□ -2.44
SMD1Q02260 YNL337WYNL337W 255 nt-0.19□□□□□ -2.44
SMD1Q02260 YBR178WYBR178W 375 nt-0.19□□□□□ -2.44
SMD1Q02260 SBH2YER019C-A 267 nt-0.21□□□□□ -2.44
SMD1Q02260 YER090C-AYER090C-A 90 nt-0.21□□□□□ -2.44
SMD1Q02260 snR50snR50 90 nt-0.21□□□□□ -2.44
SMD1Q02260 YML100W-AYML100W-A 174 nt-0.23□□□□□ -2.45
SMD1Q02260 YLR286W-AYLR286W-A 135 nt-0.24□□□□□ -2.45
SMD1Q02260 SOM1YEL059C-A 225 nt-0.25□□□□□ -2.45
SMD1Q02260 YNL266WYNL266W 420 nt-0.25□□□□□ -2.45
SMD1Q02260 YDL159C-BYDL159C-B 177 nt-0.27□□□□□ -2.45
SMD1Q02260 YIL071W-AYIL071W-A 477 nt-0.27□□□□□ -2.45
SMD1Q02260 PAU9YBL108C-A 129 nt-0.29□□□□□ -2.46
SMD1Q02260 YBR196C-AYBR196C-A 150 nt-0.3□□□□□ -2.46
SMD1Q02260 YCR095W-AYCR095W-A 159 nt-0.31□□□□□ -2.46
SMD1Q02260 Q0032Q0032 291 nt-0.33□□□□□ -2.46
SMD1Q02260 YGL007C-AYGL007C-A 87 nt-0.34□□□□□ -2.46
SMD1Q02260 YLR299C-AYLR299C-A 93 nt-0.36□□□□□ -2.47
SMD1Q02260 TFB5YDR079C-A 219 nt-0.37□□□□□ -2.47
SMD1Q02260 snR67snR67 82 nt-0.38□□□□□ -2.47
SMD1Q02260 tA(UGC)QtA(UGC)Q 76 nt-0.38□□□□□ -2.47
SMD1Q02260 YCL001W-BYCL001W-B 255 nt-0.38□□□□□ -2.47
SMD1Q02260 YOR225WYOR225W 330 nt-0.49□□□□□ -2.49
SMD1Q02260 SKI7YOR076C 2244 nt-0.5□□□□□ -2.49
SMD1Q02260 YML054C-AYML054C-A 159 nt-0.5□□□□□ -2.49
SMD1Q02260 YLR294CYLR294C 330 nt-0.51□□□□□ -2.49
SMD1Q02260 YHR180C-BYHR180C-B 105 nt-0.54□□□□□ -2.5
SMD1Q02260 YOL083C-AYOL083C-A 141 nt-0.57□□□□□ -2.5
SMD1Q02260 URB1YKL014C 5295 nt-0.57□□□□□ -2.5
SMD1Q02260 YBL071C-BYBL071C-B 99 nt-0.63□□□□□ -2.51
SMD1Q02260 snR161snR161 161 nt-0.64□□□□□ -2.51
SMD1Q02260 YAL037C-AYAL037C-A 93 nt-0.68□□□□□ -2.52
SMD1Q02260 YJL113WYJL113W 4647 nt-0.68□□□□□ -2.52
SMD1Q02260 YNL170WYNL170W 396 nt-0.69□□□□□ -2.52
SMD1Q02260 YOL164W-AYOL164W-A 183 nt-0.69□□□□□ -2.52
SMD1Q02260 snR33snR33 183 nt-0.69□□□□□ -2.52
SMD1Q02260 snR81snR81 201 nt-0.71□□□□□ -2.52
SMD1Q02260 YBR109W-AYBR109W-A 225 nt-0.73□□□□□ -2.53
SMD1Q02260 RPL41AYDL184C 78 nt-0.74□□□□□ -2.53
SMD1Q02260 YNL103W-AYNL103W-A 90 nt-0.76□□□□□ -2.53
SMD1Q02260 snR47snR47 99 nt-0.76□□□□□ -2.53
SMD1Q02260 YBR296C-AYBR296C-A 120 nt-0.76□□□□□ -2.53
SMD1Q02260 YBL100W-CYBL100W-C 120 nt-0.79□□□□□ -2.54
SMD1Q02260 ATP8Q0080 147 nt-0.8□□□□□ -2.54
SMD1Q02260 YOR376W-AYOR376W-A 156 nt-0.8□□□□□ -2.54
SMD1Q02260 YGL041C-BYGL041C-B 183 nt-0.81□□□□□ -2.54
SMD1Q02260 YGR240C-AYGR240C-A 201 nt-0.82□□□□□ -2.54
SMD1Q02260 snR38snR38 95 nt-0.83□□□□□ -2.54
SMD1Q02260 YHL009W-BYHL009W-B 5409 nt-0.84□□□□□ -2.54
SMD1Q02260 snR61snR61 90 nt-0.84□□□□□ -2.54
SMD1Q02260 YKL106C-AYKL106C-A 120 nt-0.84□□□□□ -2.54
SMD1Q02260 tT(UGU)G1tT(UGU)G1 72 nt-0.88□□□□□ -2.55
SMD1Q02260 tT(UGU)G2tT(UGU)G2 72 nt-0.88□□□□□ -2.55
SMD1Q02260 tT(UGU)PtT(UGU)P 72 nt-0.88□□□□□ -2.55
SMD1Q02260 tS(GCU)Q1tS(GCU)Q1 86 nt-0.91□□□□□ -2.56
SMD1Q02260 tP(UGG)QtP(UGG)Q 72 nt-0.92□□□□□ -2.56
SMD1Q02260 YOR316C-AYOR316C-A 210 nt-0.95□□□□□ -2.56
SMD1Q02260 snR77snR77 88 nt-0.97□□□□□ -2.56
SMD1Q02260 Q0092Q0092 141 nt-0.98□□□□□ -2.57
SMD1Q02260 CDC65tQ(CUG)M 72 nt-1.01□□□□□ -2.57
SMD1Q02260 YKL225WYKL225W 348 nt-1.01□□□□□ -2.57
SMD1Q02260 YDR034C-AYDR034C-A 177 nt-1.03□□□□□ -2.57
SMD1Q02260 snR62snR62 100 nt-1.07□□□□□ -2.58
SMD1Q02260 Q0143Q0143 153 nt-1.08□□□□□ -2.58
SMD1Q02260 YMR315W-AYMR315W-A 108 nt-1.12□□□□□ -2.59
SMD1Q02260 YMR326CYMR326C 309 nt-1.21□□□□□ -2.6
SMD1Q02260 YHR217CYHR217C 462 nt-1.27□□□□□ -2.61
SMD1Q02260 YDL159W-AYDL159W-A 132 nt-1.28□□□□□ -2.61
SMD1Q02260 YBR223W-AYBR223W-A 120 nt-1.28□□□□□ -2.61
Retrieved 100 of 7,029 protein–RNA pairs in 16.5 ms